AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Armi1g00010 | ATGGGAGCTGAAGGGATGGTCTCATTCATAGCACTTGTTGTTGTTCTACTAATTTTCCCTTTGACAGCAACAATGGTTTCAGAAAGCCACACAGATGCACAACAACAACTTCCACTAACCAATTTGGAGGGGACAATGGATGAGGAATCGGTTCAACTATTGTCGACCAATTGTTTAGTGGAAGCTCTTGAATCCAGTGACATTGATTTGGAAAAAGAAAGATTATTGACCATCCAGGATCCCGGTGTTAAGACAAGTGTAGTAGTAGCTAACAACAATATTCATTTTCCTGTTTCTTCTTTAGAAGATAGACAACATATTCGAAGGTGGAATGGTGGTGGTCCTCCTATAAGACGCAGGTTGGCTCAAGTAAACGCCCCTCATTCTCATTCTGAGACTCACTTTAATGATAACGAAGAAGAAGATGAACATGATGGTCCTTCCTTGGTGGAAGATATAGAACCGATTCCATTTACTGTTTCTAAAGCGGAGACGGGTGGGGGTGGAATCGACAATACAACAATTATTATTGTTGTTGTTTCTACTTCAACTGTCACATTTCTTCTTGCTACCCTGCTATTTTGTTGGTATACTAGGACTTTTGGTGGGGGACAAAATGATGAAAGGCCTCTTCTCAGCTTAAGTAGGAGTGCTTCACAAAAATCTTCATACTCTATCAAAGATTCTGGTGATCAATCATTGGGTACCAACTCAGACCCACAGAAAAAAGATCCCTCAAGTGTATCATTAGCCTTCGCGTCAGAGCTTCCTCCAGGAAGTTTGAGTGCTTCTGGAATACCTCCACTGAAGCCTCCACCGGGAAGGGCTGAATCGACATTAAAGCCTCCACCTGGAAGGACAGATCTGTCTATACACCCTCCATCTGCCAATAGTGCTTCAACTCCGCCTCGATCGCCTGCTGCAGTTCCACCCCTAGCTCCAGCTGCAGCTCCTTCCCCTCCTCCCCTACGAGCTCCTTCAGCTAGACGTCCACCACCGCCTCCTCCACCATCTGGAGGAGCACCTCCACCGCCTCCTCCCCTGAAGGAAGGTCCACGGCCACCACCTCCTCCAGGTGGTGGTAGAGCTCCACCTCGACCACCTGGTGGAGGCTTTAAAACTTCCCGCCATACATTTGGACCAGGTGACCCCGATGCTGATGATTCTAACAAAGCTAAGCTAAAGCCCTTCTTCTGGGATAAGGTTATGGCAACCCCTGATCAAGCAATGGTTTGGCATCAGATTAGAGCAGGATCATTCCAGTTCAATGAAGAAATGATAGAAAACTTATTTGGCTATAATGCCGCCGATAAAAATAAAGGCAACACCAAGAAGAGTTCAACATCACAAGATCCCTCTTCGCATTTTGTTCAGATTATTGATTCAAAGAAGGCCCAAAATTTGTCTATTCTTCTAAAAGCACTGAATGTGACAACAAATGAAGTTTGTGATGCGCTTAAAGAAGGAAATGAGCTCCCCGTAGAACTTATTCAAACATTGTTGAAGATGGCACCAACTGGAGAGGAAGAACTGAAGCTAAGGCTGTATAACGGGGATCTTTCTCGCCTTGGAACTGCAGAGCGGTTTCTAAAAAGATTGGTTGAAATACCGTTTGCTTTTAAAAGGCTCGAGTCTTTGCTTTTTATGTGCACGCTTCAAGACGAGGAAGAAATCATTAAGGAGTCCTTCCAAACTTTAGAGGCTGCTTGCTTACAACTTAGGAAAAGCCGATTGTTCCTCAAACTTTTGGAAGCTGTTCTAAAAACAGGGAATCGTATGAATGATGGAACTTTCCGTGGGAGTGCACAAGCATTCAAACTTGACACACTCTTGAAGCTTTCAGATGTGAAGGGTGTTGATGGGAAAACGACTCTTTTGCATTTTGTAGTACTGGAGATCATTCGTGCAGAAGGTATTAGAGCTGCGAAAACAGCCCGGGAGACCAAGAGTTCCTCCAGCTTTAAAACCGATGATCTTCTTGAAGAAGCAACTACTCATTCTTGTCAAGGAGATACAGATGAATACTATTGCACCCTTGGTCTTCAGGTGGTGTCCAGGTTGAGTAGTGAGCTCGAGGATGTCAAGAAAGCAGCCATTCTTGATGCTGAAGGGTTGAGTGGTACAGTCTCCAAATTTGGTCTTGCACTTGTAAAAGCTCGTGAGTTCCTAAATACGGATCTCAAGAGCTTAGAAAAAGAAGATGAGGACGAGGAGGAGGATGATGAGGATGAGTTTTCGACGACTTTGTCCAACTTTGTGCAAAGCGCTGAGAAGGATGTCATGTGGATGCTTGAGGAAGAAAAGAGAATAATGGCTCTTGTGAAGAACACAGCAGATTATTTCCATGGACAAGCCGGGAAGGATGAGGGATTGCGATTATTTATCATAGTTCGTGATTTCCTCATAATTTTAGATAAAGTGTGCAAAGAGGTTAAAGCCATGCCTCTAAGGCCGCCGCCTAAGACGACATCGACAAGAGGTGTTTCATCATCTAAGGCGATAGAGACAAAAGATGCTTCATCATCTAGGACGGTGGAGATGAACGATGATGTTTCATCACCTAGGACAACACAGACAAATGATGTTAAGACGACCCCTATAACACAGGAAACAGAGGATCTGCAACAAGAACCTAAGGATTCGCAACATGAGACTCAAGAATCCCAGGACTTGCAACATGAGACACATAAAGCTGAGGATATGCAACATGAGACACAGGAAATTGTGAATTCACGACGTGAGAAACAGGAAATTGATGATTTACAGGAAACGGAATCATCATACAAGATACAGAAAACTGATGATTGGCAACATGAAACAAAGGAAATCAATTATTTACCTCATGAGATACAGGAAAGGAAAACGACATACCAGCCACAGGAAGTTGACGATTCACTACATGAGACGCAGCAGGAAGATGATGATATAGAACCCAAGACACATGAAGATGATTTACGACATGAGACATTGGAACCTGATGATTCACAATCTAAGATGGAAGAAGATGATGTTTCACAACCAAAAACATGGGAAACTGATGATTTGAAACATGAGATGCATAAAACTGATTATTTGCGACATGAAACGCAGGAACCTGATGATTCAGGGACCAAGACAGAGGAAGATGATGATTCGCAACCTAAGACACATGAACAACTTCTTCCTGCCATTGCAAAGAGACGGGTGGATGGTTTTAGTTCTAGCTCAAGTTCAGACCAGGACTAA | 3225 | 43.53 | MGAEGMVSFIALVVVLLIFPLTATMVSESHTDAQQQLPLTNLEGTMDEESVQLLSTNCLVEALESSDIDLEKERLLTIQDPGVKTSVVVANNNIHFPVSSLEDRQHIRRWNGGGPPIRRRLAQVNAPHSHSETHFNDNEEEDEHDGPSLVEDIEPIPFTVSKAETGGGGIDNTTIIIVVVSTSTVTFLLATLLFCWYTRTFGGGQNDERPLLSLSRSASQKSSYSIKDSGDQSLGTNSDPQKKDPSSVSLAFASELPPGSLSASGIPPLKPPPGRAESTLKPPPGRTDLSIHPPSANSASTPPRSPAAVPPLAPAAAPSPPPLRAPSARRPPPPPPPSGGAPPPPPPLKEGPRPPPPPGGGRAPPRPPGGGFKTSRHTFGPGDPDADDSNKAKLKPFFWDKVMATPDQAMVWHQIRAGSFQFNEEMIENLFGYNAADKNKGNTKKSSTSQDPSSHFVQIIDSKKAQNLSILLKALNVTTNEVCDALKEGNELPVELIQTLLKMAPTGEEELKLRLYNGDLSRLGTAERFLKRLVEIPFAFKRLESLLFMCTLQDEEEIIKESFQTLEAACLQLRKSRLFLKLLEAVLKTGNRMNDGTFRGSAQAFKLDTLLKLSDVKGVDGKTTLLHFVVLEIIRAEGIRAAKTARETKSSSSFKTDDLLEEATTHSCQGDTDEYYCTLGLQVVSRLSSELEDVKKAAILDAEGLSGTVSKFGLALVKAREFLNTDLKSLEKEDEDEEEDDEDEFSTTLSNFVQSAEKDVMWMLEEEKRIMALVKNTADYFHGQAGKDEGLRLFIIVRDFLIILDKVCKEVKAMPLRPPPKTTSTRGVSSSKAIETKDASSSRTVEMNDDVSSPRTTQTNDVKTTPITQETEDLQQEPKDSQHETQESQDLQHETHKAEDMQHETQEIVNSRREKQEIDDLQETESSYKIQKTDDWQHETKEINYLPHEIQERKTTYQPQEVDDSLHETQQEDDDIEPKTHEDDLRHETLEPDDSQSKMEEDDVSQPKTWETDDLKHEMHKTDYLRHETQEPDDSGTKTEEDDDSQPKTHEQLLPAIAKRRVDGFSSSSSSDQD | 1074 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Armi1g00010 | 1074 | MobiDBLite | consensus disorder prediction | 218 | 248 | - | - | |
| Armi1g00010 | 1074 | PANTHER | FORMIN-RELATED | 144 | 1072 | IPR027643 | GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro) | |
| Armi1g00010 | 1074 | SMART | it6-source | 384 | 819 | IPR015425 | - | |
| Armi1g00010 | 1074 | MobiDBLite | consensus disorder prediction | 822 | 872 | - | - | |
| Armi1g00010 | 1074 | MobiDBLite | consensus disorder prediction | 814 | 1074 | - | - | |
| Armi1g00010 | 1074 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 384 | 830 | IPR015425 | - | |
| Armi1g00010 | 1074 | MobiDBLite | consensus disorder prediction | 1041 | 1057 | - | - | |
| Armi1g00010 | 1074 | MobiDBLite | consensus disorder prediction | 972 | 1034 | - | - | |
| Armi1g00010 | 1074 | MobiDBLite | consensus disorder prediction | 125 | 151 | - | - | |
| Armi1g00010 | 1074 | Coils | Coil | 720 | 740 | - | - | |
| Armi1g00010 | 1074 | MobiDBLite | consensus disorder prediction | 264 | 279 | - | - | |
| Armi1g00010 | 1074 | Pfam | Formin Homology 2 Domain | 389 | 803 | IPR015425 | - | |
| Armi1g00010 | 1074 | Gene3D | Formin, FH2 domain | 390 | 822 | IPR042201 | - | |
| Armi1g00010 | 1074 | MobiDBLite | consensus disorder prediction | 304 | 365 | - | - | |
| Armi1g00010 | 1074 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 332 | 814 | - | - | |
| Armi1g00010 | 1074 | MobiDBLite | consensus disorder prediction | 873 | 961 | - | - | |
| Armi1g00010 | 1074 | MobiDBLite | consensus disorder prediction | 218 | 391 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Armi1g00010 | K28090 | formin |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 19333 | Armi14g01520 | Armi1g00010 | |
| 20139 | Armi1g00010 | Armi8g02681 |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 373448 | Armi | Armi1g00010 | Armi-Chr1:246559 | Armi5g01542 | Armi-Chr5:38238353 | |
| 412404 | Armi | Armi1g00010 | Armi-Chr1:246559 | Armi14g01520 | Armi-Chr14:75583420 | |
| 419906 | Armi | Armi1g00010 | Armi-Chr1:246559 | Armi8g02681 | Armi-Chr8:96677035 |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Armi1g00010 | ACH | 420 | 868 | FH2 protein (formin) gene family | AT5G54650 | 65.328 | 0.0 | 589.0 | |
| Armi2g00853 | . | 74 | 729 | FH2 protein (formin) gene family | AT1G70140 | 43.192 | 4.55e-161 | 479.0 | |
| Armi2g00995 | ACH | 1228 | 1644 | FH2 protein (formin) gene family | AT5G07740 | 79.426 | 0.0 | 689.0 | |
| Armi3g02322 | . | 1489 | 1565 | FH2 protein (formin) gene family | AT5G07740 | 64.935 | 1.70e-26 | 100.0 | |
| Armi3g04475 | ACH | 12 | 756 | FH2 protein (formin) gene family | AT1G70140 | 44.329 | 1.45e-175 | 519.0 | |
| Armi4g01460 | . | 438 | 489 | FH2 protein (formin) gene family | AT2G43800 | 66.038 | 6.98e-17 | 72.8 | |
| Armi4g02725 | ACH | 427 | 880 | FH2 protein (formin) gene family | AT5G67470 | 71.581 | 0.0 | 640.0 | |
| Armi5g00617 | . | 1 | 431 | FH2 protein (formin) gene family | AT1G31810 | 71.926 | 0.0 | 703.0 | |
| Armi5g01542 | ACH | 433 | 848 | FH2 protein (formin) gene family | AT5G54650 | 61.298 | 2.45e-162 | 501.0 | |
| Armi5g01793 | ACH | 10 | 759 | FH2 protein (formin) gene family | AT1G70140 | 44.665 | 0.0 | 565.0 | |
| Armi8g01239 | . | 444 | 884 | FH2 protein (formin) gene family | AT3G05470 | 68.707 | 0.0 | 593.0 | |
| Armi8g02681 | ACH | 422 | 900 | FH2 protein (formin) gene family | AT5G54650 | 64.242 | 0.0 | 617.0 | |
| Armi9g01042 | . | 551 | 1026 | FH2 protein (formin) gene family | AT3G25500 | 59.553 | 0.0 | 560.0 | |
| Armi11g00298 | ACH | 309 | 749 | FH2 protein (formin) gene family | AT4G15200 | 56.329 | 4.14e-167 | 501.0 | |
| Armi11g01595 | . | 551 | 900 | FH2 protein (formin) gene family | AT5G54650 | 60.684 | 2.15e-126 | 382.0 | |
| Armi12g00967 | . | 1 | 506 | FH2 protein (formin) gene family | AT5G07740 | 57.708 | 1.83e-179 | 567.0 | |
| Armi12g00969 | ACH | 1333 | 1458 | FH2 protein (formin) gene family | AT5G07740 | 78.571 | 3.47e-64 | 209.0 | |
| Armi14g01163 | ACH | 1215 | 1644 | FH2 protein (formin) gene family | AT5G07740 | 74.246 | 0.0 | 657.0 | |
| Armi14g01520 | ACH | 437 | 860 | FH2 protein (formin) gene family | AT5G54650 | 66.589 | 0.0 | 566.0 | |
| Armi16g01380 | ACH | 547 | 1026 | FH2 protein (formin) gene family | AT3G25500 | 68.116 | 0.0 | 626.0 | |
| Armi17g01311 | ACH | 554 | 1026 | FH2 protein (formin) gene family | AT3G25500 | 72.577 | 0.0 | 693.0 | |
| Armi18g00403 | ACH | 432 | 884 | FH2 protein (formin) gene family | AT5G67470 | 69.913 | 0.0 | 616.0 |