Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Armi1g00042	ATGGCCTTCTCATCCACAACCCCACTTCACAGAATCACCGGCATCCCCACCAACTCTTCTTCTTCTTCTTCTTCACCATTTCTCAAACCCTACTCTTCGCAACTATCCTTTCAATTCAACCAAATTGGATCCACCTCAACCAAGTCGTTTGCCGTTTCTCCTCTCCCCGCTAAGCAATCACCGGAACCAATGGTGCTGGAGAAGACGCCGGTTCTCGATCAATCGTCAATCCTCCAACGCCCTGATTCTCTCGGCCGTTTTGGTAAGTATGGCGGCAAGTATGTTCCTGAAACCCTAATGTATGCTCTCTCTGAGCTCGAATCCGCTTTCAAAGCCCTCGCCACCGACCATGAATTCCAGAAGGAATTAGATGGGATATTGAAGGACTATGTTGGTAGGGAAAGCCCTCTTTATTTTGCAGAACGGCTTACTGAGCATTACAAACGACCCAACGGTGAAGGACCTGAAATCTACCTTAAGAGGGAAGATCTTAACCACACTGGTGCACATAAGATCAACAATGCTGTTGCACAAGCTTTGCTGGCCAAGAAGTTAGGGAAAGAACGGATTATTGCCGAAACTGGTGCTGGACAGCATGGAGTTGCAACCGCCACTGTATGTGCGCGCTTTGGATTGCAATGCATCATCTATATGGGTGCTCAAGATATGGAAAGACAGGCCCTTAATGTATTCAGAATGAAGCTCCTTGGAGCAGAGGTTAGAGCTGTTCATTCTGGGACAGCCACACTGAAGGATGCTACATCAGAGGCCATAAGAGACTGGGTGACCAATGTGGAAACAACTCATTACATCTTGGGCTCGGTCGCTGGGCCACATCCCTACCCCATGATGGTAAGGGAGTTCCATGCAGTAATTGGTAAGGAAACAAGAAAGCAAGCATTGGAAAAATGGGGTGGAAGTCCAGATGTGTTGGTTGCTTGTGTTGGTGGAGGATCGAATGCTATGGGGCTGTTCCATGAGTTTGTTGACGACAAAGATGTTAGATTGATCGGAGTAGAGGCTGCAGGTTTTGGCCTAGACAGTGGAAAGCATGCAGCTACCTTAACAAAAGGAGAGGTTGGGGTGTTGCATGGAGCCATGAGCTATTTGTTACAGGATGACGATGGACAAATCATTGAGCCTCATTCTATCAGTGCAGGGCTGGACTACCCCGGAGTTGGACCTGAGCACAGCTTTCTGAAAGATACCGGTCGTGCTGAATATCATAGCGTCACTGATGAGGAAGCATTGGAAGCATTTAAGAGACTGTCTAGATTAGAGGGCATAATCCCGGCTCTGGAGACATCTCATGCACTGGCTTATCTAGAGAAACTGTGTCCAACCCTACCTAATGGCACCAAGGTTGTCCTTAACTGCAGTGGTAGAGGAGACAAGGATGTTCATACTGCCATCAAGCATCTGCAGGTCTGA	1431	47.94	MAFSSTTPLHRITGIPTNSSSSSSSPFLKPYSSQLSFQFNQIGSTSTKSFAVSPLPAKQSPEPMVLEKTPVLDQSSILQRPDSLGRFGKYGGKYVPETLMYALSELESAFKALATDHEFQKELDGILKDYVGRESPLYFAERLTEHYKRPNGEGPEIYLKREDLNHTGAHKINNAVAQALLAKKLGKERIIAETGAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMKLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGSPDVLVACVGGGSNAMGLFHEFVDDKDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYHSVTDEEALEAFKRLSRLEGIIPALETSHALAYLEKLCPTLPNGTKVVLNCSGRGDKDVHTAIKHLQV	476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Armi1g00042	476	Gene3D	-	87	289	IPR036052	-
	Armi1g00042	476	SUPERFAMILY	Tryptophan synthase beta subunit-like PLP-dependent enzymes	81	473	IPR036052	-
	Armi1g00042	476	Pfam	Pyridoxal-phosphate dependent enzyme	133	461	IPR001926	-
	Armi1g00042	476	CDD	Trp-synth-B	102	469	IPR006654	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Armi1g00042	476	FunFam	Tryptophan synthase beta chain	133	287	-	-
	Armi1g00042	476	ProSitePatterns	Tryptophan synthase beta chain pyridoxal-phosphate attachment site.	164	178	IPR006653	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Armi1g00042	476	NCBIfam	tryptophan synthase subunit beta	85	473	IPR006654	GO:0004834(InterPro)\|GO:0006568(InterPro)
	Armi1g00042	476	PANTHER	TRYPTOPHAN SYNTHASE-RELATED	65	475	IPR023026	GO:0000162(PANTHER)\|GO:0000162(InterPro)\|GO:0004834(PANTHER)\|GO:0004834(InterPro)\|GO:0005737(PANTHER)\|GO:0009570(PANTHER)
	Armi1g00042	476	FunFam	Tryptophan synthase beta chain	288	467	-	-
	Armi1g00042	476	MobiDBLite	consensus disorder prediction	1	26	-	-
	Armi1g00042	476	Gene3D	-	132	467	IPR036052	-
	Armi1g00042	476	PIRSF	Trp-syn-beta	68	476	IPR023026	GO:0000162(InterPro)\|GO:0004834(InterPro)
	Armi1g00042	476	Hamap	Tryptophan synthase beta chain [trpB].	80	474	IPR023026	GO:0000162(InterPro)\|GO:0004834(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Armi1g00042	K01696	tryptophan synthase beta chain [EC:4.2.1.20]

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	369081	Armi	Armi15g01540	Armi-Chr15:74831597	Armi1g00042	Armi-Chr1:864214
	369082	Armi	Armi15g01541	Armi-Chr15:74834481	Armi1g00042	Armi-Chr1:864214
	413133	Armi	Armi1g00042	Armi-Chr1:864214	Armi15g01539	Armi-Chr15:74780186
	419913	Armi	Armi1g00042	Armi-Chr1:864214	Armi8g02703	Armi-Chr8:96948252