AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00044 ATGATAGGATGGATTAAAAAGCTGCTCATCACATTCGGTGCTTCATTCATTTGGCTCGTCTGTTTGATTTACTTTACCCAGGGTTTTAGATCTTTTGTATGGACAGCAGTTTCCTACCAGCTCAAAGACAGATTAAAGTTATCGCCCTCTGCTTCTCAATTCGTAACATCCATCTCGTTTTTTCCATGGAGCATAAAACCAATATATGGAATTCTTTCAGATTGTATCCCAGTAAAAGGAAGAAAAAGGATTCCTTATTTAGTCATTGCGACACTGCTCTCACTCTTTCCATGGGTGATTCTTGGCCTGCAGGAATCCATAAGAAATTCCAGAGATCAACTCATGATCTTCTTGTTATTGCAAAATCTTGGCTCTGCAATGGCAGATGTTGTAATTGATGCAATGATTGCAGAGGCAGCACGGCAGGAAAAGGCTAAATTCGCTGGCGACCTGCAATCAATATCATGGATGACAATGGCTGTCGGAGGAATCTGTGGGAGTTTGTTTGGAGGATATGCATTAAGTAACTTTCAAATGGGCAACATATTCTTGCTTTTCTCTGTTTTGCCAACTATACAGCTATTTTCATGTGGGTTTGTGACAGAAAGTCCTATAGGCAGTTCAAATTTGCCTGAATTTTCTACTTCTAATGGCACCAACATACAAAACGAAAATGTATCAGATGAAGATAGATTATCATCCGACATGCCTAAACCAGGTACTTTGATGAGGAAAAGGAGCAATAAAAGTAGCAAGAAATTAACATCCGATACAAGTAAGATGCCTGGAAAAGACGGGTCTTTGCCATCACAATGGTTTCAATCTTTCAAAGTGGCTGGCTATACCCTTTTCAAAGCTTTTCGACGCCCAGTTATCTTGAGACCAATGGGTTGGTTTTTCCTATCGCAGGTGACCATTCCAAATCTTTCAACGGTAATGTTCTACTACCAGACAGAAGTTCTAAATCTAGATGCTTCTTTTCTGGGTACGTCACGCGTTGTTGGTTGGATGGGCCTCATGCTTGGAACTTTCACTTACAACCGCTATTTAAAGAAGATTAAGTTAAGAAAGATTCTCATGTTCGCTCATCTTACCCTGTCGTTTTTGACACTTCTAGACATAGTATTGGTTTCTAGACTACACGTTCCGTTTGGCATGTCCGATGAAATATTGGTGTTATTCGGGTCTGCTCTCTCAGATGCAGTCCATCAATTCAAGTTCATGCCTTTCTTGATCCTATCAGGACAACTTTGCCCACCTGGAATCGAAGGGACTCTGTTTGCGCTATTCATGTCGATAAACAACTTTGGGTCGACATTGAGTTCATTCGTTGGTGCTGGTTTGGCTTCGGTTCTAAACATCTCTTCGGGTTCTTTTGATAATCTTGGTTTTGGGATTGGGATTGAAGTCGTCTGCACATTAATACCAGTTGCTTTCTTGTTTTTGATACCAAAGGAGGCTACAGGGGTATCAACATAA 1479 40.7 MIGWIKKLLITFGASFIWLVCLIYFTQGFRSFVWTAVSYQLKDRLKLSPSASQFVTSISFFPWSIKPIYGILSDCIPVKGRKRIPYLVIATLLSLFPWVILGLQESIRNSRDQLMIFLLLQNLGSAMADVVIDAMIAEAARQEKAKFAGDLQSISWMTMAVGGICGSLFGGYALSNFQMGNIFLLFSVLPTIQLFSCGFVTESPIGSSNLPEFSTSNGTNIQNENVSDEDRLSSDMPKPGTLMRKRSNKSSKKLTSDTSKMPGKDGSLPSQWFQSFKVAGYTLFKAFRRPVILRPMGWFFLSQVTIPNLSTVMFYYQTEVLNLDASFLGTSRVVGWMGLMLGTFTYNRYLKKIKLRKILMFAHLTLSFLTLLDIVLVSRLHVPFGMSDEILVLFGSALSDAVHQFKFMPFLILSGQLCPPGIEGTLFALFMSINNFGSTLSSFVGAGLASVLNISSGSFDNLGFGIGIEVVCTLIPVAFLFLIPKEATGVST 492
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00044 492 MobiDBLite consensus disorder prediction 211 227 - -
Armi1g00044 492 CDD MFS-FBT 18 481 - -
Armi1g00044 492 SUPERFAMILY MFS general substrate transporter 15 487 IPR036259 -
Armi1g00044 492 Pfam BT1 family 27 485 IPR039309 -
Armi1g00044 492 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 6 488 IPR039309 -
Armi1g00044 492 NCBIfam folate-biopterin family MFS transporter 18 485 IPR004324 GO:0016020(InterPro)
Armi1g00044 492 MobiDBLite consensus disorder prediction 211 266 - -
Armi1g00044 492 Gene3D MFS general substrate transporter like domains 14 483 IPR036259 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00044 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
364667 Armi Armi12g01710 Armi-Chr12:73814408 Armi1g00044 Armi-Chr1:872459
373470 Armi Armi1g00044 Armi-Chr1:872459 Armi8g01136 Armi-Chr8:35324489