AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00071 ATGTTTGTTCCAGTTTTTGATGCAAATTTATGCCTAGCTAACGCGGTCTCTAGTCCTAAGGAAAAGGAGGGCGATTCACCGCTCAAAGATGACAATAGCGATATCGTACCTCCAGCAAATGTCTTAAAGCAATTGGCCATAGGTGTTCAGACCACAAAAATTATAAAGTCAATGAAGGATCTTATGATATCATCAAGAGATTCTTCACCTGTGAAGGAGAGATCTACTTTGAGCTTATCTGCTATGAAGTCATTAGTAGTAGGGGAGAAAGAAGATACGTTTGCTTCTGAGTTCGGTCGTGATGAGAAAGTAATGTCTCTTATCCATTCACTTACAAATGCAGAAGGACATCTTTCTCGAAGGAAGATTGGATCTCGGGTGGAGAAGAACACGAACCTTACTAATTTCGCCAAAGAAATCCATGGTGCTCCTCCTGAATGCTTTGTTACAGAGCTTGCGGAAGCCATTGGAAGCTTGAAAACTCTGCGGAAAATGGCATTGTTTTGGTCCAGGGTCGTTGTAGAAGTGAGAAGGCTATGGTGTGAAGGACAACATATTCCCGGCATCCCTCCAGATGAGATTCCCAACTTAAACTCGTGTTTGTTGTATCAGCAGTTGCAGGTTATCAATTGCTGTATTTCTAGGAAAAGACGGCGTGCTATTGCCACTGAATCGTTAGATTCTGTTTTAAAACTAGTGAATCTTGATGGTGACTACAAATGTGGAGATATTCCTCCGCTAAGCCCTGTTGTGTATGCGAGAATTAGCTCCGGGGAACTTGTGCTTCGATTAGGAGCTGATAAACGAAGAGAGAACTGTACACTTTTGGAAACTGGTGAACCTGTATATACCCCAGTTATGCAGGAAGGGCCTCTACTCACAGAAGACCTTATCAAGGAAACAGAGGAATTTGTGTTACGTACGGGGAGCGTCGGTGTAGGGTGTTCTCAGCTTCTTTCGGACATGCAGGCTTTCAAGGCTGCAAATCCCGGGTGCATATTAGAAGATTTCGTTAGATGGCACTCGCCCCCTGACTGGACCGAAGCATCAACAGATGATGAAAGTAAAGAATCTGTCAATGGTGACAATTCATCTTCTAAAGGACAGCTTAGTATTCGTATGCAGAAAGAAGGTAATTTGTGGCGAGAACTGTGGGAAACTGCAAAACCAGTACCTGCTGTTAGACAATCTCCACTATACGATGAGGATTTATCTGTGGAAGGTATTCTGCATAGCTTAGAGAGCATATCACCTTCTGGTTTATTTGAACAGCTGTTTCTTTCTCTTCTAAGTTCAGGATGTGCAATTGCCGAGGGAAGAATTTGCGGTAATGAAAATATGTACAAGACGTTCAAGGAGTGTAAAGACTACATTATTGTTACTTGTCAAGCCAAAAGTTGGATTGAGAAAGCTGATGATATATGCCAGGTGTATGAGACAGTGACGATGATGGCATTGAATCCAACCGGGGTTATAAGGGTCACCACGAAGCAGCCGCAGCAACCTGACGCTAGCGAGACTTGTGAACAAAAAGGTGGTGGTTTTGGGAAACTTGGCTCCATGTTTGGTGGTGGAATGGATTCAAAAACACCACCAAAGAACCAAGAACCCACAATGTTTTCAAAGAAGCCACCAAAACCTGCAACTCCTCTTGAAAATATTTAA 1665 42.94 MFVPVFDANLCLANAVSSPKEKEGDSPLKDDNSDIVPPANVLKQLAIGVQTTKIIKSMKDLMISSRDSSPVKERSTLSLSAMKSLVVGEKEDTFASEFGRDEKVMSLIHSLTNAEGHLSRRKIGSRVEKNTNLTNFAKEIHGAPPECFVTELAEAIGSLKTLRKMALFWSRVVVEVRRLWCEGQHIPGIPPDEIPNLNSCLLYQQLQVINCCISRKRRRAIATESLDSVLKLVNLDGDYKCGDIPPLSPVVYARISSGELVLRLGADKRRENCTLLETGEPVYTPVMQEGPLLTEDLIKETEEFVLRTGSVGVGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWTEASTDDESKESVNGDNSSSKGQLSIRMQKEGNLWRELWETAKPVPAVRQSPLYDEDLSVEGILHSLESISPSGLFEQLFLSLLSSGCAIAEGRICGNENMYKTFKECKDYIIVTCQAKSWIEKADDICQVYETVTMMALNPTGVIRVTTKQPQQPDASETCEQKGGGFGKLGSMFGGGMDSKTPPKNQEPTMFSKKPPKPATPLENI 554
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00071 554 MobiDBLite consensus disorder prediction 499 554 - -
Armi1g00071 554 MobiDBLite consensus disorder prediction 346 360 - -
Armi1g00071 554 Pfam Rab3 GTPase-activating protein catalytic subunit 263 414 IPR026147 -
Armi1g00071 554 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 35 508 IPR045700 GO:0005096(PANTHER)|GO:0005096(InterPro)|GO:0043547(PANTHER)|GO:0043547(InterPro)
Armi1g00071 554 MobiDBLite consensus disorder prediction 344 369 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00071 K18270 Rab3 GTPase-activating protein catalytic subunit
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
19351 Armi14g01567 Armi1g00071
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:1145034 Armi14g01567 Armi-Chr14:76688330 transposed