AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00077 ATGGATATTGAAATCGTTGGGAGGCATGCGCTCCTCTTCGACGATGATTCCACGGCAGCCTTTGTTAACTCCGATGACGCACTTGTCGAATGGAATTCTCTACTAATCGATCGTTACGACGTCCGCCACCTCCTTTCCACCCCTCCGCCGTCTCGAAGGCGGCGCAATCCACAAACATCGCACTCATCCAACGCTGATGCGGAAATCGATTATGAACGATACCTCGATCTCCCCTCGCCTTCCGAGGAACAAGAAGCAGATGCAAAACCAGAACCTGTGGGTGGATTTAACGCCGTTCCTTTTTCTTATGGAAACTATGAGGCTTCTAATGATCAAAAGACTGCCGAGACTGAATCGGAATGCCCTGGATTTCATCCCCCCTTCCTTGTTCCTGACAGCCTGGTTCAAAACTTGCCTCCTACAGAGAAGGTTCATCAGATTATTGCGAGGACTGCTCTCTTTGTCAGCAAAAATGGAGGTCAATCAGAGATTGTTTTGAGGGTGAAACAAGGAGACAACCCGACATTTGGGTTCTTAATGCCTGATCATTACCTACATCCGTACTTCAGGTTTCTGGTCGATCACCAGGATCTTCTGCAGTCAAAAGACAATGGACAGGCTGAAAATGATGAGAAAACATCTAAAACTGAGAATGCGGCAGGAGCATTGTCTTTGCTTGGTTCTGTATATGGCACTGGTGAGGACGAGGATGGTGGAGCAGAGCATGCATCATCATCTAGAGAGTGTGTATCTGATGTGGCCATCCCTCTTGCAGCAGGGAAAACCATGTTGCCAGCTGGAAAAGATGAACCTGTTTCAAAACATTCACTTTCTTCTAAGGAAGATGCTCCTATTTTAAAAAGGAATTCTTTAACAAATGCATTGAAAGCTGGGCGAACTAGCAGCATGAGAAAAGGTGAGTCCTTAGGTTCACTCTCTACTGTTCCAGATAAGTTGCGGGCTTCTTCTCTTCCTCCCATTTCCAAGAACGAGAACATGCTCCTGGATCCTCCTTCTGAAATGAAACGGTTAGTTGACAAGATTGTTGAGTTCATCATCAAGAATGGGAGGCAGTTTGAGGCAGTACTTATGGAACAAGACCGTGCTCATGGGAGATTCCCATTCCTAATCCCATCAAACAAATTCCATCCATACTATTTAAAAGTTCTCCAGAAAAGCCAGGAGTCGAAATTAACTGTCAAGAGTTTGCACAACGAGAAGGAAGATTTCAGAGGACATGTCTTGAACAAGAAAACATCTATCTCAAGGGAGACTGAAAATTGTTTGATGGAATCTGATGATATACCACTTGATTCTGAAAGGAAAGAGAAGTTTAAGATGGTAATTAACAAGTCTAGAAGGGAAGGATCAGATTTGCCATCTAAAGCCACACAACCACAACTTGGGGTCCAGGTGGATGCTGCTCAAGCAGCAGCTATTCTTCAGGCTGCTACAAGAGGCATTAAACATCCAAATTTGGGGATTCTTTCAAAGACGTCGCTGAATGGCAACAGTTATGGCCCCAGAAGTGAGGGCGGACAACCCTCTAATTCATCTCATCCCAGTTATGCTGCTAAAGAAGTTGCAAGTGAAGCCGATTCCTCTGAGGCACACTTGACTCAGGAGCAGAAGTTGAAGGCCGAGAGACTAAAACGGGCTAAGATGTTTGTGGCAATGCTGAAAAGTGGAGCTGCTCCATCAAAAACTGAACCCTTGCGTGGCTTATCAGCAGAGCCACAAGGATCAGGGGCTTCTTTAGGCGATGACAATCGCTTTGCAGCCAAAGAAAGAGAGAGGAGCACGGTCCCTTCAGATTTTGACACTCCAGACAAAAAAATAAAATCGGAAAAGGAACATTTGGACGAAGAAAGACGAGCAAAGAGGAAATACCGAGCTAGATCTAGCAGAGACGAGGAAGGTGAAGCAGCAGAAGCACAAGAAGATGAAGAAGAAGATGATGTTAATGATGATGATGAGAGGGAAGGAAAAAGGTCAAGTAAACACCGTTCGAAGAAGCACCGATCTCATAATCATTCGGTTGAAGAAGAGAGTGAAGAAAGATATGGAGACGAGAGAGATTATAAGCATACAAAGAGAAGGCATCGGTCTCATCGTACTTCCCATAAACATGGTGACAGGGACAAACACGATGAAGAAAGGGATCATAAGCACTCGAGGAAGAAGAAACATCGATCTTCTAGTTCTTATGAAGATGATGAACAAGAAAGCGAACCTGAAAGGGTACATGAGTATGCTAGAAAGAAGCATCGATCACACCATTCTTCACATGATGAAGAGTCTCATGATGAAGGGGAAAGCGATCTTAAATATTCTAGGAAAACGCGCTCTTCTCGTGGAGAAGATGAAGGGAGGAAGGACAGACATTCTAGGAGGAAACATCGGTCTCATAAATCTTCTCATCACAGTAGAGATAAGCATAAGCATAGGAAAAGTCACTCGTCTAGGCATAGGCAGAAGCCTGATGTCTCTTCAGAAGAGGAGCTGAGGGAGCATAGTAAGGCCGATAAGCATGGGAAGGGATCAAACTCGGAAAGAGAAGAACTGGAAGAGGGGGAGATCAGCTCAAAGTTCTCGGGTCAGTCGAGAGGACCTTTGGTTGATGTTGCTAGTAGAGAACCTTCGGTGGATGTATCAAGTTCTTATCAAGATCGGAGACCACTGACTCAACCCTCCGAGACAACCAATGTTCCTGATGACCTTAGGGCCAAAATCAGAGCAATGTTATTGTCCACATTGTAA 2760 44.93 MDIEIVGRHALLFDDDSTAAFVNSDDALVEWNSLLIDRYDVRHLLSTPPPSRRRRNPQTSHSSNADAEIDYERYLDLPSPSEEQEADAKPEPVGGFNAVPFSYGNYEASNDQKTAETESECPGFHPPFLVPDSLVQNLPPTEKVHQIIARTALFVSKNGGQSEIVLRVKQGDNPTFGFLMPDHYLHPYFRFLVDHQDLLQSKDNGQAENDEKTSKTENAAGALSLLGSVYGTGEDEDGGAEHASSSRECVSDVAIPLAAGKTMLPAGKDEPVSKHSLSSKEDAPILKRNSLTNALKAGRTSSMRKGESLGSLSTVPDKLRASSLPPISKNENMLLDPPSEMKRLVDKIVEFIIKNGRQFEAVLMEQDRAHGRFPFLIPSNKFHPYYLKVLQKSQESKLTVKSLHNEKEDFRGHVLNKKTSISRETENCLMESDDIPLDSERKEKFKMVINKSRREGSDLPSKATQPQLGVQVDAAQAAAILQAATRGIKHPNLGILSKTSLNGNSYGPRSEGGQPSNSSHPSYAAKEVASEADSSEAHLTQEQKLKAERLKRAKMFVAMLKSGAAPSKTEPLRGLSAEPQGSGASLGDDNRFAAKERERSTVPSDFDTPDKKIKSEKEHLDEERRAKRKYRARSSRDEEGEAAEAQEDEEEDDVNDDDEREGKRSSKHRSKKHRSHNHSVEEESEERYGDERDYKHTKRRHRSHRTSHKHGDRDKHDEERDHKHSRKKKHRSSSSYEDDEQESEPERVHEYARKKHRSHHSSHDEESHDEGESDLKYSRKTRSSRGEDEGRKDRHSRRKHRSHKSSHHSRDKHKHRKSHSSRHRQKPDVSSEEELREHSKADKHGKGSNSEREELEEGEISSKFSGQSRGPLVDVASREPSVDVSSSYQDRRPLTQPSETTNVPDDLRAKIRAMLLSTL 919
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00077 919 Pfam Surp module 146 194 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Armi1g00077 919 Pfam Surp module 342 391 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Armi1g00077 919 MobiDBLite consensus disorder prediction 499 524 - -
Armi1g00077 919 Gene3D Surp module 328 398 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Armi1g00077 919 MobiDBLite consensus disorder prediction 293 309 - -
Armi1g00077 919 MobiDBLite consensus disorder prediction 262 335 - -
Armi1g00077 919 Pfam Alternative splicing regulator 2 86 IPR019147 -
Armi1g00077 919 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 2 768 IPR040397 GO:0000395(PANTHER)
Armi1g00077 919 MobiDBLite consensus disorder prediction 824 860 - -
Armi1g00077 919 ProSiteProfiles SURP motif repeat profile. 344 386 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Armi1g00077 919 ProSiteProfiles SURP motif repeat profile. 147 189 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Armi1g00077 919 Coils Coil 613 633 - -
Armi1g00077 919 MobiDBLite consensus disorder prediction 562 906 - -
Armi1g00077 919 MobiDBLite consensus disorder prediction 51 65 - -
Armi1g00077 919 MobiDBLite consensus disorder prediction 45 70 - -
Armi1g00077 919 MobiDBLite consensus disorder prediction 676 696 - -
Armi1g00077 919 SUPERFAMILY Surp module (SWAP domain) 124 194 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Armi1g00077 919 SUPERFAMILY Surp module (SWAP domain) 324 391 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Armi1g00077 919 FunFam Splicing factor 3A subunit 1 328 399 - -
Armi1g00077 919 MobiDBLite consensus disorder prediction 590 640 - -
Armi1g00077 919 Gene3D Surp module 140 195 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Armi1g00077 919 MobiDBLite consensus disorder prediction 880 903 - -
Armi1g00077 919 SMART DRY-EERY-2 1 107 IPR019147 -
Armi1g00077 919 MobiDBLite consensus disorder prediction 499 540 - -
Armi1g00077 919 MobiDBLite consensus disorder prediction 795 823 - -
Armi1g00077 919 MobiDBLite consensus disorder prediction 641 657 - -
Armi1g00077 919 SMART surpneu2 145 198 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Armi1g00077 919 SMART surpneu2 342 395 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Armi1g00077 919 MobiDBLite consensus disorder prediction 759 794 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00077 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr13:16330854 Armi1g00077 Armi-Chr1:1211029 dispersed
Armi Armi-Chr1:1211029 Armi6g00956 Armi-Chr6:18497665 dispersed