AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00086 ATGAGCAATGCAGGCGTAAGGCCGGGCCTGAACACCTACACCGCTCTACTAACACTCTTAGCGAAAAAGAAACTTGTAGATGTAGCTGCAAAGATTTTGCTTGAAATGAAGGCAATGGGATACTCTGTAGATGTGACCGCGAGCGATGTTCTCATGGTTTTCATCAAGGATGCGTCTGTTGATCTCGCTCTAAGATGGCTAAGATTCATGGGTTCTTCCGGGATCAGAACAAACAACTTTATCGTAAGGCAACTTTTCGAATCATGCATGAAAAACGGGCTCTACGAGTCTGCCAAACCTCTTCTTGAAAACTACGTCGAATCCGCTGCTAAAGTTGATCTCATTCTCTACATGTCGATCCTAGCCCATCTCGTAAGATGTCAAGAAGAACACAACGAACGACATTTGATGTCAATCTTGAGTGCCACGAAACATAAAGCACACGCCTTTATGTGCGGGCTTTTCACCGGGCCAGAGCAGAGGAAACAACCCGTTCTAGTCTTTGTTCGCGAATTCTTCCAGAGTATTGATTACGAAGCCGAAGAAGGAGCTGCACGATACTTTGTCAACGTGCTCCTAAACTATCTTGTTCTAATGGGTCAGATCAATCGCGCACGTTGCGTGTGGAAAGTTTCCTACGAAAACAAACTTTTCCCGAAGGCGATTGTGTTCGATCAGCACATTGCTTGGTCACTCGATGTTAGAAACCTATCGGTTGGTGCAGCTCTTATAGCCGTCGTTCATACCCTCCATAGATTCAGGAAACGGATGTTGTATTATGGCGTGGTTCCACAACGAATCAAGTTGGTGACCGGACCGACGCTAAAGATTGTGGTTGCACAGATGTTGAGCTCAGTTGAATCACCATTTGAGGTTAGTAAGGTGGTTTTAAGGGCACCAGGGGAGTCTGTATCAGAATGGTTCAAGAAGCCAATTGTTCAGCAGTTTCTGCTGAATGAGATACCATCAAGAGGTGATATCTTGATGCATAAGCTTAATATACTTTTTCCCAGTTCTGCCCCTGAGATTAGGTCATTGAATCTGCCTAAACCACTTGTTGGTGGAAGGGTAATGTAG 1077 45.03 MSNAGVRPGLNTYTALLTLLAKKKLVDVAAKILLEMKAMGYSVDVTASDVLMVFIKDASVDLALRWLRFMGSSGIRTNNFIVRQLFESCMKNGLYESAKPLLENYVESAAKVDLILYMSILAHLVRCQEEHNERHLMSILSATKHKAHAFMCGLFTGPEQRKQPVLVFVREFFQSIDYEAEEGAARYFVNVLLNYLVLMGQINRARCVWKVSYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYGVVPQRIKLVTGPTLKIVVAQMLSSVESPFEVSKVVLRAPGESVSEWFKKPIVQQFLLNEIPSRGDILMHKLNILFPSSAPEIRSLNLPKPLVGGRVM 358
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00086 358 SMART SMR-2 229 308 IPR002625 -
Armi1g00086 358 NCBIfam pentatricopeptide repeat 12 45 IPR002885 -
Armi1g00086 358 ProSiteProfiles Smr domain profile. 232 308 IPR002625 -
Armi1g00086 358 PANTHER OS03G0856100 PROTEIN 1 311 - -
Armi1g00086 358 Pfam Pentatricopeptide repeat domain 1 39 IPR002885 -
Armi1g00086 358 Gene3D Tetratricopeptide repeat domain 1 161 IPR011990 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00086 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr13:13310009 Armi1g00086 Armi-Chr1:1342047 dispersed