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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00088 ATGGTAGTTGTTAAGGGTTTAAGCACAATCAAGAGTAGAGTTTCAGGAGAACGTGGTACCAGGAAGAGTGGAATAGGTGGAGTTAGAAGTCTCAAGGTGTATGCAGAAAACGAGAAGGTTAAGAGTGATAGCAGGGATCATGTTGTTGCAGAAACCAAGCAAGTTTTAATTCGAAGGAAATCTATTCCAGTCAAAGCTGAAACCAGTCATATTCATGCCAATTGTCACAAGGTGGACATCAACAAGTTGGAGAAGATTCATGGGAAAAACATCAACTCTGGTCAAACTAAAGTAGGAAGAAAAGTGTTGGCGGATATCAGCAATTCACGGGGTAATATTCAGAAGAATGAAGCCTTTGATGGCTCCAAACCTGGGAAAGGTAAATTGGAAAAGATGGCCAGTTCACAAAGGGCTTCAGTTGGTACGAGAGCCAGGAATGCAAGTTCGTCAGGCAAACTGTCAATGGGAACGCATGGGGGAAGCCAGAGTGAAGATATTGATGGCCGCCATACACTGGGTCGAGTAATCGGCACCAAGGATCTGAAGGTCTTTAATGGTAAGCCAAGGCTAAAGGGTCAAGAAACTGTTGGTGATGCTACAAGGAAATCTTTAAGGAATTATAACCCACCACAAAGGAAATCTCTACCGGCTCTAAAACATGTCGACAAGGCGGATACATGTGATCTCCAGAAAGGAAATTTGGAAAACAAAGTGAAGAACAAGGAAAAATGTGGCTTCTCTGTTAAACCTAAAGTGGGAACGAAAGTTGTACCGCAAGTAACCAATGCCAGGGACCACCGTTGGAAGAATAGAGTTAGCGATGGATGTATAAAAATGTTGTCAGAAGGTCAGCCAACAGTTGATGCACATAGATTGTCTAGGAGATCAATGAAGCCAACTGTGAAAACTACAATTGGTATTCCCCGAGCTCAACGGGTATCAAAAAGCACCTCTGTTTCTAGCAAATCAACATTTGCAACTTCTGTTTCGTCTAAGAGGAAGGAGACTACATCAAGAGCTTCATTTTCTAAACATGCTGAATCTATAACTTGTGAGCAACCTGCAGTAATTTGTGAGCAACCTGCAGAAGGTGTTCCATCTGCTTGCAACAGCAACTTGGTCGCGAGTACATCAAATGTTACTGCCAAGGGGAAACCTGGCCGTCGAAAATCCTACACGTCTTTGCTAATCGCAAGATCAACGCTGTTAAAGGAACATGGCAATGCCACCAAGCAGGAGATCCTACCCAATATCTATGATGATTGCAATCACCTTGAAGTTGCTGAATATATTGATGAGATATATCAACATTATTGGGTTACAGAAGCACATAATCAGCCACTAAAAAACTATATGGAGATCCAGACAGAAATCACGCCGCAAATGCGAGGCATACTGATCAATTGGCTCATAGAAGTACATTTGAAATTTGATTTGATGCAAGAGACACTTTATCTGATGGTCACCCTGTTAGACTGTTACTTGTCTGTTGCGACTATTAAGAAAAACGAAATGCAATTAGTTGGTCTCACTGCACTATTGATAGCATCCAAGTATGAGGACTTCTGGCATCCAAAGGTTATGGAATTAATTGGCATTTCGGCAGAGGTATACACTAGAGAACAAATGCTTGGAATGGAAACGACGATTTTAAGGAAGCTGAACTTTCGTCTTAATCTGCCTACGCCCTATGTCTTTACGCTGAGATTTCTTAGAGCTGCTCAGGCAGACAAAAAGTTTGAAAATCTAGCATACTTTCTCATTGAGCTGTGCTTGGTGGAATATGATGCTTTACATTTCAAGCCATCACTGCTATGCGCATCAGCTATTTATGTTGCTAGATGTACCCTGCACTTGACCCCAGCATGGACCCCACTTCTATGCAAGCATTCTCACTATGAAGAGTTTCAGATCAGGGATTGCGCCGAGATGATCTTGAGATTTCATCAAGCTGCAAGAACATCGATGTTGAAAGTAACGTATGAAAAATACATGGGCGCTGATAACTGCAGAGTTGCAACTATTAGACCTCTAGACAGGCTTCCAACTCCATAG 2055 42.14 MVVVKGLSTIKSRVSGERGTRKSGIGGVRSLKVYAENEKVKSDSRDHVVAETKQVLIRRKSIPVKAETSHIHANCHKVDINKLEKIHGKNINSGQTKVGRKVLADISNSRGNIQKNEAFDGSKPGKGKLEKMASSQRASVGTRARNASSSGKLSMGTHGGSQSEDIDGRHTLGRVIGTKDLKVFNGKPRLKGQETVGDATRKSLRNYNPPQRKSLPALKHVDKADTCDLQKGNLENKVKNKEKCGFSVKPKVGTKVVPQVTNARDHRWKNRVSDGCIKMLSEGQPTVDAHRLSRRSMKPTVKTTIGIPRAQRVSKSTSVSSKSTFATSVSSKRKETTSRASFSKHAESITCEQPAVICEQPAEGVPSACNSNLVASTSNVTAKGKPGRRKSYTSLLIARSTLLKEHGNATKQEILPNIYDDCNHLEVAEYIDEIYQHYWVTEAHNQPLKNYMEIQTEITPQMRGILINWLIEVHLKFDLMQETLYLMVTLLDCYLSVATIKKNEMQLVGLTALLIASKYEDFWHPKVMELIGISAEVYTREQMLGMETTILRKLNFRLNLPTPYVFTLRFLRAAQADKKFENLAYFLIELCLVEYDALHFKPSLLCASAIYVARCTLHLTPAWTPLLCKHSHYEEFQIRDCAEMILRFHQAARTSMLKVTYEKYMGADNCRVATIRPLDRLPTP 684
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00088 684 MobiDBLite consensus disorder prediction 135 161 - -
Armi1g00088 684 Pfam Cyclin, N-terminal domain 433 559 IPR006671 -
Armi1g00088 684 Gene3D - 553 682 - -
Armi1g00088 684 MobiDBLite consensus disorder prediction 310 344 - -
Armi1g00088 684 FunFam Cyclin N-terminal domain containing 2 448 556 - -
Armi1g00088 684 SMART cyclin-7 468 552 IPR013763 -
Armi1g00088 684 SMART cyclin-7 565 647 IPR013763 -
Armi1g00088 684 SUPERFAMILY Cyclin-like 561 680 IPR036915 -
Armi1g00088 684 Gene3D - 448 552 - -
Armi1g00088 684 Pfam Cyclin, C-terminal domain 561 677 IPR004367 -
Armi1g00088 684 SUPERFAMILY Cyclin-like 423 559 IPR036915 -
Armi1g00088 684 CDD CYCLIN-CCNB1-like-rpt1 427 556 - -
Armi1g00088 684 SMART Cyclin-C-2 561 678 IPR004367 -
Armi1g00088 684 FunFam putative cyclin-B3-1 isoform X3 557 682 - -
Armi1g00088 684 MobiDBLite consensus disorder prediction 113 169 - -
Armi1g00088 684 PANTHER CYCLINS 414 664 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00088 K21777 G2/mitotic-specific cyclin-B, other
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Event-related genes

Select Gene_1 Gene_2 Event_name
19395 Armi14g01675 Armi1g00088
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr18:23984717 Armi1g00088 Armi-Chr1:1384678 dispersed
Armi Armi-Chr1:1384678 Armi4g00144 Armi-Chr4:3708528 dispersed
Armi Armi-Chr1:1384678 Armi10g01444 Armi-Chr10:54063157 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Armi1g00088 ACH 21 647 Core Cell Cycle gene family AT1G16330 44.042 1.35e-166 491.0
Armi1g00293 . 34 256 Core Cell Cycle gene family AT4G03270 31.004 4.40e-23 95.9
Armi1g00360 . 18 361 Core Cell Cycle gene family AT5G10270 53.623 6.61e-120 365.0
Armi1g01033 ACH 91 195 Core Cell Cycle gene family AT1G49620 43.86 1.89e-23 91.3
Armi1g01094 ACH 14 282 Core Cell Cycle gene family AT4G34160 54.577 1.53e-102 305.0
Armi1g01134 ACH 48 282 Core Cell Cycle gene family AT1G70210 41.87 7.88e-55 180.0
Armi1g01784 . 18 364 Core Cell Cycle gene family AT5G10270 52.857 1.15e-121 370.0
Armi1g03699 . 1 317 Core Cell Cycle gene family AT5G27620 60.502 3.35e-138 393.0
Armi1g04601 ACH 99 273 Core Cell Cycle gene family AT5G27620 27.027 4.64e-12 63.2
Armi1g04634 ACH 1 222 Core Cell Cycle gene family AT5G48820 45.267 1.39e-50 162.0
Armi1g04860 . 12 497 Core Cell Cycle gene family AT1G02970 57.715 0.0 548.0
Armi2g00282 . 16 459 Core Cell Cycle gene family AT1G80370 52.484 7.44e-150 432.0
Armi2g00506 . 18 357 Core Cell Cycle gene family AT5G10270 53.079 1.06e-119 362.0
Armi2g00623 . 5 310 Core Cell Cycle gene family AT1G20930 46.032 1.47e-87 273.0
Armi2g01713 . 18 288 Core Cell Cycle gene family AT4G34160 48.252 5.89e-80 247.0
Armi2g01758 ACH 1 354 Core Cell Cycle gene family AT5G43080 57.412 3.65e-144 410.0
Armi2g02394 ACH 42 303 Core Cell Cycle gene family AT5G65420 49.627 3.49e-76 234.0
Armi2g03666 . 1 505 Core Cell Cycle gene family AT5G10270 77.395 0.0 777.0
Armi3g00174 . 12 339 Core Cell Cycle gene family AT1G70210 59.172 3.33e-127 365.0
Armi3g00630 . 204 361 Core Cell Cycle gene family AT5G11300 35.185 1.24e-21 96.3
Armi3g02236 . 5 397 Core Cell Cycle gene family AT1G73690 76.19 0.0 606.0
Armi3g03530 . 11 315 Core Cell Cycle gene family AT1G20930 86.885 0.0 561.0
Armi3g03957 . 1 1005 Core Cell Cycle gene family AT3G12280 68.035 0.0 1373.0
Armi3g04008 . 8 302 Core Cell Cycle gene family AT3G54180 25.223 4.64e-13 68.6
Armi3g04645 . 17 371 Core Cell Cycle gene family AT5G64960 45.33 4.80e-96 306.0
Armi4g00144 . 1 430 Core Cell Cycle gene family AT1G76310 60.771 7.86e-176 496.0
Armi4g01495 . 3 354 Core Cell Cycle gene family AT5G43080 49.864 1.25e-116 340.0
Armi4g02439 ACH 37 425 Core Cell Cycle gene family AT2G17620 58.853 3.42e-142 410.0
Armi4g02723 . 7 322 Core Cell Cycle gene family AT4G37630 34.862 4.72e-49 164.0
Armi4g02735 . 12 304 Core Cell Cycle gene family AT1G76540 31.31 2.23e-41 147.0
Armi4g02748 ACH 12 304 Core Cell Cycle gene family AT1G76540 29.773 9.74e-43 150.0
Armi4g02820 ACH 86 195 Core Cell Cycle gene family AT1G49620 39.13 5.99e-17 73.9
Armi4g02965 . 18 357 Core Cell Cycle gene family AT5G10270 46.471 9.21e-107 331.0
Armi5g00767 . 18 363 Core Cell Cycle gene family AT5G10270 51.297 7.47e-119 359.0
Armi5g01010 . 17 371 Core Cell Cycle gene family AT5G64960 44.78 1.85e-94 302.0
Armi5g01087 . 1 1009 Core Cell Cycle gene family AT3G12280 68.774 0.0 1388.0
Armi5g01316 . 18 367 Core Cell Cycle gene family AT5G10270 52.557 3.55e-119 362.0
Armi5g02719 . 5 289 Core Cell Cycle gene family AT3G48750 40.767 4.33e-74 227.0
Armi6g00101 . 1 220 Core Cell Cycle gene family AT5G48820 44.915 1.21e-47 154.0
Armi6g00424 . 1 81 Core Cell Cycle gene family AT2G27970 88.889 8.40e-53 157.0
Armi6g01749 . 14 308 Core Cell Cycle gene family AT1G76540 25.723 1.82e-28 112.0
Armi6g01782 . 1 434 Core Cell Cycle gene family AT5G25380 47.992 1.82e-148 430.0
Armi6g02012 . 1 294 Core Cell Cycle gene family AT3G48750 38.591 2.56e-71 226.0
Armi6g02499 . 18 470 Core Cell Cycle gene family AT5G63610 78.867 0.0 726.0
Armi6g02766 . 1 479 Core Cell Cycle gene family AT5G10270 78.484 0.0 740.0
Armi7g00539 ACH 91 195 Core Cell Cycle gene family AT1G49620 42.857 7.16e-19 79.7
Armi7g00593 ACH 15 281 Core Cell Cycle gene family AT4G34160 50.542 6.55e-95 286.0
Armi7g00690 ACH 75 333 Core Cell Cycle gene family AT1G70210 40.684 4.13e-58 187.0
Armi7g00691 . 75 114 Core Cell Cycle gene family AT1G70210 57.5 2.49e-10 53.9
Armi7g01109 . 20 312 Core Cell Cycle gene family AT1G76540 34.237 3.64e-55 183.0
Armi8g00158 . 1 478 Core Cell Cycle gene family AT4G28980 57.113 0.0 537.0
Armi8g00623 . 42 131 Core Cell Cycle gene family AT5G10270 83.333 7.58e-48 156.0
Armi8g00997 . 223 365 Core Cell Cycle gene family AT1G76310 23.313 4.97e-06 46.2
Armi8g01404 . 18 366 Core Cell Cycle gene family AT5G10270 51.989 2.06e-118 362.0
Armi9g00121 . 89 131 Core Cell Cycle gene family AT1G18040 69.767 1.00e-16 71.2
Armi9g00431 . 14 304 Core Cell Cycle gene family AT1G76540 26.1 2.97e-28 112.0
Armi9g00649 . 1 80 Core Cell Cycle gene family AT2G27970 91.463 1.30e-52 157.0
Armi9g02100 . 10 290 Core Cell Cycle gene family AT3G48750 35.395 2.07e-56 185.0
Armi9g02398 . 58 296 Core Cell Cycle gene family AT4G03270 42.739 4.59e-56 181.0
Armi10g00049 . 2 250 Core Cell Cycle gene family AT4G28980 26.07 4.44e-13 71.2
Armi10g00707 . 76 244 Core Cell Cycle gene family AT5G27620 24.211 3.86e-06 47.4
Armi10g00800 . 1 290 Core Cell Cycle gene family AT3G48750 36.395 7.71e-65 209.0
Armi10g01030 . 18 363 Core Cell Cycle gene family AT5G10270 51.297 4.54e-118 357.0
Armi10g01444 . 27 434 Core Cell Cycle gene family AT5G06150 55.583 1.10e-152 438.0
Armi10g02066 . 20 307 Core Cell Cycle gene family AT1G76540 35.862 9.83e-57 189.0
Armi10g02106 . 1 294 Core Cell Cycle gene family AT3G48750 84.354 0.0 527.0
Armi11g01149 . 18 367 Core Cell Cycle gene family AT5G10270 51.282 1.16e-117 360.0
Armi11g01547 . 1 299 Core Cell Cycle gene family AT4G03270 43.77 8.55e-73 224.0
Armi12g00383 ACH 19 304 Core Cell Cycle gene family AT1G76540 24.629 7.11e-27 108.0
Armi12g00478 . 18 363 Core Cell Cycle gene family AT5G10270 49.432 3.80e-112 343.0
Armi12g00556 ACH 1 353 Core Cell Cycle gene family AT5G43080 58.221 8.23e-149 422.0
Armi12g00963 . 18 357 Core Cell Cycle gene family AT5G10270 47.826 3.40e-103 322.0
Armi12g01681 ACH 42 302 Core Cell Cycle gene family AT5G65420 45.39 8.61e-70 219.0
Armi13g00243 . 18 358 Core Cell Cycle gene family AT5G10270 46.199 6.72e-105 322.0
Armi13g00487 ACH 86 195 Core Cell Cycle gene family AT1G49620 40.541 1.11e-16 73.6
Armi13g00562 . 62 367 Core Cell Cycle gene family AT5G67260 49.688 5.73e-99 296.0
Armi13g00616 ACH 14 306 Core Cell Cycle gene family AT1G20930 31.31 1.28e-40 145.0
Armi13g01036 . 4 326 Core Cell Cycle gene family AT5G02110 27.746 8.31e-30 115.0
Armi13g01311 . 20 391 Core Cell Cycle gene family AT5G10270 42.706 3.28e-93 294.0
Armi14g00029 . 21 368 Core Cell Cycle gene family AT5G10270 45.938 4.30e-102 315.0
Armi14g00240 . 42 303 Core Cell Cycle gene family AT5G65420 47.601 5.61e-77 237.0
Armi14g00614 . 1 459 Core Cell Cycle gene family AT1G44110 59.091 0.0 554.0
Armi14g00979 . 75 272 Core Cell Cycle gene family AT5G27620 21.681 2.85e-06 47.4
Armi14g01162 . 18 385 Core Cell Cycle gene family AT5G10270 44.357 3.54e-104 324.0
Armi14g01394 . 18 366 Core Cell Cycle gene family AT5G10270 52.857 3.99e-119 360.0
Armi15g00209 . 20 307 Core Cell Cycle gene family AT1G76540 36.177 6.51e-58 191.0
Armi17g00025 . 2 309 Core Cell Cycle gene family AT3G54180 82.468 0.0 533.0
Armi17g00367 . 4 237 Core Cell Cycle gene family AT5G02110 29.218 6.80e-26 105.0
Armi17g00449 . 1 429 Core Cell Cycle gene family AT5G06150 52.55 4.19e-147 424.0
Armi17g00840 . 1 294 Core Cell Cycle gene family AT3G48750 87.075 0.0 540.0
Armi17g00841 . 1 294 Core Cell Cycle gene family AT3G48750 86.735 0.0 539.0
Armi17g00918 . 1 291 Core Cell Cycle gene family AT3G48750 35.786 1.32e-56 184.0
Armi17g00952 . 9 291 Core Cell Cycle gene family AT1G73690 38.754 1.33e-58 193.0
Armi17g00954 . 9 300 Core Cell Cycle gene family AT1G73690 37.374 3.94e-59 194.0
Armi17g00955 . 1 294 Core Cell Cycle gene family AT3G48750 37.874 7.35e-60 193.0
Armi17g01358 ACH 55 239 Core Cell Cycle gene family AT5G27620 24.227 1.66e-11 61.6
Armi17g01382 ACH 1 221 Core Cell Cycle gene family AT5G48820 42.063 4.39e-41 138.0
Armi18g00206 . 24 357 Core Cell Cycle gene family AT5G10270 48.503 6.94e-109 336.0
Armi18g00336 ACH 55 195 Core Cell Cycle gene family AT1G49620 39.007 2.14e-19 79.7
Armi18g00372 . 10 367 Core Cell Cycle gene family AT5G67260 45.055 9.15e-99 295.0
Armi18g00842 ACH 14 429 Core Cell Cycle gene family AT1G20610 54.762 4.63e-156 446.0
Armi18g01235 . 18 80 Core Cell Cycle gene family AT2G27970 87.692 3.99e-36 117.0