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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00150 ATGGGTACATGTTATTCCGCCGCCGGCGACGGCCGGAGAGATAGAAAAGCCGGCGGTGGCGGTGAAGATGATGATGATGATGGTGAAAGTGGTAGATGGTGGAAGTCAAAGAGTGGTAAGAAGATGAATCGTTATAAAGCCACCGATTTGAGGTTCAAATTTGGCGGCGGCCGGCGTTCTGCGGCGGAGGACGGCGGCCTCCTCCAGGTTCCCGGTAGGATTTCCGGTAATGGGTCAAGTAGCATCGCGAGTTTACACACGCAGCAGGGGAAGAAAGGGACGAATCAAGACGCCATGATTGTCTGGGAGAAATTCAATTCAACGAACGAGGAGGCGGTGTTTTGTGGAGTATTTGACGGGCACGGTCCTTACGGACATATGGTTGCTCGGAAAATTATGGACTCTCTACCCGTTTTATTGTCCACCCATTGGAAAACTACTTCAGATAGCGGAAATGGCAATGCCAATGGAAACACGCACGATGAAGAAGAAGAAGAAGATACATGGTGTCAAGAATCGGAAGTCGGGGAGAAAGAACCAGTACCCGAGAAGTATCTTTCACTTAAAAAGTCGATATTAAAAGCTTTCAGGTTAATGGATATGGAACTTAAAACGCATCCGTCGATCGATTGTTTTTGCAGCGGATCAACTGCGGTCGCTTTGATCAAGCAGGCTCAAGATCTTATAATTGGAAATCTTGGAGACTCGAGAGCGGTTTTGGCAACGAGAGACGATGACAATGCTTTAGTCGCGGTTCAATTGACGGTTGATTTGAAACCCAATCTCCCAAGAGAAGCAGCTCGGATTCAGCAGTTCAAAGGACGGGTGTTCGCATTGCAAGACGAGCCCGAGGTTGCACGCGTTTGGTTGCCCAACAGCGATTCTCCCGGTTTGGCAATGGCTCGAGCTTTTGGGGACTTTTGTCTAAAGGACTTCGGCTTAATTTCCGTCCCGGATGTTTATTACCACCGTATCACCGATAAAGACAAGTTTGTCGTTCTCGCAACCGACGGGGTATGGGATGTTCTCTCGAATAAAGAAGTCGTGGACATCGTGGCGGCCGCCCCTAGCCGATCGACCGCCGCCAGAGCTCTTGTCGATTGTGCAACAAGAGCATGGCGACTCAAATATCCCACATCCAAAAACGACGATTGTGCTGCCGTATGTCTATTTCTTGATCCAAAATCCGAACCCGATTCACAAAAGACGGAAATCAAAGAACCCGATACCAGTATTGTTCCACACGAGCCTACAACTAATCCGACGGTTCTTGAGCATTCAGGCACCGTTAAAGATTCAAGCGAGATCGTGCCATTTGTCGAACCACCAGAAGACAAACTACCCGAAAAGGGTGTCGGTGGTTCGAAACGGAGTCTAGCCGAGTGCATAACGAGTACCGAAGATGAAGAATGGTCGGCTCTTGAGGGTGTGACTCGGGTCAATAGTCTTCTAAGCATTCCAAGATTCTTGACTGGTGAGAAAAGATCAAACAGTTCAAGGAAATCTGTCATCAAGATCTGA 1521 48.59 MGTCYSAAGDGRRDRKAGGGGEDDDDDGESGRWWKSKSGKKMNRYKATDLRFKFGGGRRSAAEDGGLLQVPGRISGNGSSSIASLHTQQGKKGTNQDAMIVWEKFNSTNEEAVFCGVFDGHGPYGHMVARKIMDSLPVLLSTHWKTTSDSGNGNANGNTHDEEEEEDTWCQESEVGEKEPVPEKYLSLKKSILKAFRLMDMELKTHPSIDCFCSGSTAVALIKQAQDLIIGNLGDSRAVLATRDDDNALVAVQLTVDLKPNLPREAARIQQFKGRVFALQDEPEVARVWLPNSDSPGLAMARAFGDFCLKDFGLISVPDVYYHRITDKDKFVVLATDGVWDVLSNKEVVDIVAAAPSRSTAARALVDCATRAWRLKYPTSKNDDCAAVCLFLDPKSEPDSQKTEIKEPDTSIVPHEPTTNPTVLEHSGTVKDSSEIVPFVEPPEDKLPEKGVGGSKRSLAECITSTEDEEWSALEGVTRVNSLLSIPRFLTGEKRSNSSRKSVIKI 506
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00150 506 ProSiteProfiles PPM-type phosphatase domain profile. 82 392 IPR001932 -
Armi1g00150 506 MobiDBLite consensus disorder prediction 145 176 - -
Armi1g00150 506 MobiDBLite consensus disorder prediction 397 411 - -
Armi1g00150 506 CDD PP2Cc 82 392 IPR001932 -
Armi1g00150 506 Pfam Protein phosphatase 2C 86 369 IPR001932 -
Armi1g00150 506 MobiDBLite consensus disorder prediction 9 42 - -
Armi1g00150 506 SMART PP2C-4 72 390 IPR001932 -
Armi1g00150 506 PANTHER PROTEIN PHOSPHATASE 58 391 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Armi1g00150 506 MobiDBLite consensus disorder prediction 1 42 - -
Armi1g00150 506 SUPERFAMILY PP2C-like 78 394 IPR036457 -
Armi1g00150 506 Gene3D - 79 400 IPR036457 -
Armi1g00150 506 MobiDBLite consensus disorder prediction 397 421 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00150 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
20159 Armi1g00150 Armi8g02861
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:2906816 Armi2g03805 Armi-Chr2:176848370 dispersed
Armi Armi-Chr1:2906816 Armi8g02861 Armi-Chr8:99352309 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Armi1g00150 ACH 42 489 PP2C-type Phosphatase gene family AT1G16220 61.269 0.0 543.0
Armi1g01458 . 1 281 PP2C-type Phosphatase gene family AT1G34750 73.404 1.88e-153 428.0
Armi1g01889 ACH 8 428 PP2C-type Phosphatase gene family AT1G09160 74.822 0.0 636.0
Armi1g01907 . 1 353 PP2C-type Phosphatase gene family AT5G27930 65.439 0.0 512.0
Armi1g02342 . 26 580 PP2C-type Phosphatase gene family AT5G19280 54.578 0.0 605.0
Armi1g02542 . 1 288 PP2C-type Phosphatase gene family AT5G01700 56.711 1.71e-121 354.0
Armi1g02953 . 1 1094 PP2C-type Phosphatase gene family AT2G20050 67.993 0.0 1485.0
Armi1g03929 . 364 488 PP2C-type Phosphatase gene family AT1G16220 42.424 9.80e-23 92.0
Armi1g03983 . 1 361 PP2C-type Phosphatase gene family AT2G29380 54.279 7.25e-142 407.0
Armi1g04022 ACH 1 654 PP2C-type Phosphatase gene family AT2G28890 64.185 0.0 861.0
Armi1g04211 ACH 44 388 PP2C-type Phosphatase gene family AT5G06750 47.564 3.17e-120 352.0
Armi2g00108 . 1 511 PP2C-type Phosphatase gene family AT1G72770 52.381 2.88e-177 506.0
Armi2g00184 . 301 412 PP2C-type Phosphatase gene family AT5G57050 46.429 1.85e-21 85.5
Armi2g01538 . 2 416 PP2C-type Phosphatase gene family AT1G47380 77.108 0.0 667.0
Armi2g02702 . 5 378 PP2C-type Phosphatase gene family AT3G12620 67.46 0.0 535.0
Armi2g02890 . 120 435 PP2C-type Phosphatase gene family AT1G07430 64.984 2.61e-145 419.0
Armi2g03127 . 81 361 PP2C-type Phosphatase gene family AT2G29380 49.481 2.02e-83 256.0
Armi2g03374 . 83 413 PP2C-type Phosphatase gene family AT5G51760 50.299 1.70e-102 307.0
Armi2g03439 . 48 132 PP2C-type Phosphatase gene family AT3G51370 78.824 7.39e-45 147.0
Armi2g03594 ACH 4 378 PP2C-type Phosphatase gene family AT2G33700 71.391 0.0 551.0
Armi2g03805 . 1 490 PP2C-type Phosphatase gene family AT3G02750 62.805 0.0 582.0
Armi3g00426 ACH 6 436 PP2C-type Phosphatase gene family AT1G68410 75.0 0.0 652.0
Armi3g02479 . 1 401 PP2C-type Phosphatase gene family AT5G53140 65.261 0.0 513.0
Armi3g02596 . 152 266 PP2C-type Phosphatase gene family AT2G30020 64.348 1.21e-44 147.0
Armi3g03382 . 1013 1093 PP2C-type Phosphatase gene family AT2G20050 45.455 7.54e-15 67.4
Armi3g03581 ACH 10 378 PP2C-type Phosphatase gene family AT2G33700 69.415 0.0 531.0
Armi3g03848 . 75 741 PP2C-type Phosphatase gene family AT1G75010 45.221 0.0 578.0
Armi3g04592 . 79 444 PP2C-type Phosphatase gene family AT1G67820 47.967 6.33e-108 322.0
Armi4g00584 . 1 488 PP2C-type Phosphatase gene family AT3G02750 62.986 0.0 589.0
Armi4g02415 . 10 361 PP2C-type Phosphatase gene family AT3G51470 67.778 2.41e-173 486.0
Armi4g02470 ACH 1 378 PP2C-type Phosphatase gene family AT3G51370 75.654 0.0 604.0
Armi4g02749 . 1 371 PP2C-type Phosphatase gene family AT4G33920 65.252 1.75e-179 502.0
Armi4g02752 . 144 371 PP2C-type Phosphatase gene family AT4G33920 59.829 6.01e-93 281.0
Armi4g04050 . 116 435 PP2C-type Phosphatase gene family AT1G07430 62.617 9.55e-144 415.0
Armi4g04225 . 1 395 PP2C-type Phosphatase gene family AT2G30020 57.468 5.30e-145 414.0
Armi4g04604 . 1 383 PP2C-type Phosphatase gene family AT5G53140 62.016 1.07e-171 483.0
Armi4g04626 . 1 388 PP2C-type Phosphatase gene family AT4G27800 58.081 7.56e-171 481.0
Armi5g02286 ACH 11 435 PP2C-type Phosphatase gene family AT1G68410 77.7 0.0 674.0
Armi5g02312 . 146 236 PP2C-type Phosphatase gene family AT5G27930 59.341 1.57e-35 123.0
Armi5g02313 . 257 322 PP2C-type Phosphatase gene family AT3G05640 69.697 1.65e-30 107.0
Armi5g02766 . 11 390 PP2C-type Phosphatase gene family AT2G25620 66.927 0.0 519.0
Armi6g00738 . 6 380 PP2C-type Phosphatase gene family AT3G12620 71.768 0.0 560.0
Armi6g01913 . 1 347 PP2C-type Phosphatase gene family AT3G06270 68.286 4.16e-173 488.0
Armi6g02688 . 1 383 PP2C-type Phosphatase gene family AT3G62260 53.333 2.25e-136 392.0
Armi6g02734 . 1 783 PP2C-type Phosphatase gene family AT2G35350 57.442 0.0 814.0
Armi7g00067 . 1 511 PP2C-type Phosphatase gene family AT1G72770 53.065 3.86e-175 501.0
Armi7g00223 . 1 289 PP2C-type Phosphatase gene family AT3G15260 75.433 1.01e-162 451.0
Armi7g00668 ACH 1 376 PP2C-type Phosphatase gene family AT4G33920 68.7 0.0 520.0
Armi7g00855 . 1 281 PP2C-type Phosphatase gene family AT1G22280 73.31 2.38e-151 422.0
Armi7g01074 . 1 293 PP2C-type Phosphatase gene family AT4G31750 81.356 2.24e-176 488.0
Armi7g01921 ACH 76 389 PP2C-type Phosphatase gene family AT2G25620 58.228 1.96e-129 374.0
Armi8g00116 . 180 427 PP2C-type Phosphatase gene family AT4G26080 48.4 8.49e-72 224.0
Armi8g00117 . 129 427 PP2C-type Phosphatase gene family AT4G26080 51.29 1.42e-101 305.0
Armi8g00242 . 223 333 PP2C-type Phosphatase gene family AT4G26080 58.929 3.80e-36 125.0
Armi8g00329 ACH 72 389 PP2C-type Phosphatase gene family AT2G25620 56.25 2.76e-127 369.0
Armi8g00718 . 1 282 PP2C-type Phosphatase gene family AT4G28400 63.251 1.63e-128 365.0
Armi8g00868 . 1 511 PP2C-type Phosphatase gene family AT1G72770 51.796 2.27e-167 480.0
Armi8g01186 ACH 13 420 PP2C-type Phosphatase gene family AT1G09160 76.225 0.0 633.0
Armi8g01253 . 1 350 PP2C-type Phosphatase gene family AT3G05640 64.286 1.05e-171 479.0
Armi8g01391 . 1 285 PP2C-type Phosphatase gene family AT4G31750 83.86 6.85e-177 489.0
Armi8g01938 ACH 1 369 PP2C-type Phosphatase gene family AT4G33920 68.649 0.0 514.0
Armi8g02861 ACH 49 489 PP2C-type Phosphatase gene family AT1G16220 60.398 0.0 555.0
Armi9g00048 . 1 384 PP2C-type Phosphatase gene family AT3G17090 70.026 0.0 535.0
Armi9g00413 . 1 384 PP2C-type Phosphatase gene family AT3G12620 64.156 0.0 510.0
Armi9g01085 . 4 85 PP2C-type Phosphatase gene family AT1G47380 74.39 2.45e-38 131.0
Armi10g00168 . 1 783 PP2C-type Phosphatase gene family AT2G35350 56.88 0.0 807.0
Armi10g00515 . 1 350 PP2C-type Phosphatase gene family AT3G05640 55.493 2.92e-137 394.0
Armi10g00910 . 6 493 PP2C-type Phosphatase gene family AT3G16560 64.128 0.0 597.0
Armi10g01037 . 1 346 PP2C-type Phosphatase gene family AT4G31860 78.035 0.0 588.0
Armi10g01075 . 1 307 PP2C-type Phosphatase gene family AT3G06270 65.595 9.80e-143 405.0
Armi10g01170 . 1 318 PP2C-type Phosphatase gene family AT4G32950 50.599 1.77e-105 310.0
Armi11g00378 . 23 462 PP2C-type Phosphatase gene family AT1G03590 68.791 0.0 609.0
Armi11g01250 . 971 1037 PP2C-type Phosphatase gene family AT2G20050 67.164 3.76e-23 89.4
Armi11g01346 . 1 395 PP2C-type Phosphatase gene family AT4G38520 74.307 0.0 635.0
Armi12g00059 . 89 511 PP2C-type Phosphatase gene family AT1G72770 56.308 2.78e-161 464.0
Armi12g00248 ACH 1 338 PP2C-type Phosphatase gene family AT4G31860 75.953 0.0 554.0
Armi12g00629 . 2 428 PP2C-type Phosphatase gene family AT1G47380 77.209 0.0 694.0
Armi12g01375 . 95 369 PP2C-type Phosphatase gene family AT1G43900 73.818 4.58e-152 430.0
Armi13g00285 . 146 218 PP2C-type Phosphatase gene family AT5G27930 57.534 9.20e-26 97.1
Armi13g00295 . 146 218 PP2C-type Phosphatase gene family AT5G27930 57.534 9.20e-26 97.1
Armi13g01264 ACH 1 378 PP2C-type Phosphatase gene family AT3G51370 74.211 0.0 595.0
Armi13g01834 . 1 361 PP2C-type Phosphatase gene family AT3G51470 64.341 4.57e-177 495.0
Armi14g00107 ACH 1 282 PP2C-type Phosphatase gene family AT1G34750 74.113 6.97e-159 441.0
Armi14g00877 . 3 428 PP2C-type Phosphatase gene family AT1G47380 76.923 0.0 676.0
Armi14g01436 ACH 1 341 PP2C-type Phosphatase gene family AT4G31860 75.66 0.0 558.0
Armi16g00576 . 1 658 PP2C-type Phosphatase gene family AT2G40860 66.415 0.0 922.0
Armi16g00969 . 76 362 PP2C-type Phosphatase gene family AT2G29380 69.36 2.50e-147 421.0
Armi16g01037 ACH 1 654 PP2C-type Phosphatase gene family AT2G28890 64.335 0.0 875.0
Armi16g01256 . 4 395 PP2C-type Phosphatase gene family AT2G30020 55.138 2.91e-134 387.0
Armi16g01635 ACH 30 1035 PP2C-type Phosphatase gene family AT3G63340 52.456 0.0 1072.0
Armi17g00150 . 1 292 PP2C-type Phosphatase gene family AT5G01700 53.559 4.14e-115 337.0
Armi17g00904 ACH 1 389 PP2C-type Phosphatase gene family AT5G06750 62.211 1.62e-175 492.0
Armi17g01002 ACH 147 361 PP2C-type Phosphatase gene family AT1G75010 22.374 2.84e-06 48.1
Armi17g01110 ACH 1 662 PP2C-type Phosphatase gene family AT1G07630 63.688 0.0 832.0
Armi17g01211 . 3 395 PP2C-type Phosphatase gene family AT2G30020 57.895 3.20e-139 400.0
Armi17g01237 . 65 267 PP2C-type Phosphatase gene family AT1G34750 25.118 3.36e-06 45.8
Armi17g01600 ACH 36 445 PP2C-type Phosphatase gene family AT3G63340 37.198 3.20e-74 246.0
Armi18g00770 ACH 1 378 PP2C-type Phosphatase gene family AT3G51370 78.068 0.0 625.0