Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Armi1g00170	ATGGCGTTTTTGTTGAAGAAGATTCTAGAGTCTGCAAATCCTCTGAATTCCAGTACTTCCACATCTTCATCGAGTTCGAATTACTCAATTTCAAGCCATGTATCCTTATCAGATCAGATCATCGTGTGTTCGTCGTCGACTGGCGAGTTCGATCGAATCCCCTTGGATATATTTATGCAAATCCTGAAACTACTTGGACCTAAAGAGGCCGCGAAGCTCACGGTTATCTGTAAATCGTGGAAATTAATCGTTTCTGATAACATGTTTTGGATATCGTACCTTCAGAACCAGCAAGGTCCTTGGGATTCGATGTTCTTCGCGGAAACTAATTTGCGATCCGGTTATCCTCTTCGAACATATCCTTCTCGGATGCAATCGTTTATGCATATCTATGGTCAACGAGCACAGGTTCCCGGAGCCATTATCATTGACGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGATTCTCCATCTGGGCGGGCAGCAACATTTTTGGAATTTGGTAACATCGAGTCTCCAATGTACTCGAGGCTTCGCCATTTCTTTGCAACAATATATAGCAGGATGCATGTGAAATCATATACACAGCCAACTGTTGTCTCGATTCCAATCATCCAATCTGACAATACACAAGCTGCTAAAACAGCTAGACGACAACTAAAAGAAGCCATCTACTCGGCATTGTTTGACATGAATGTTCCCTCTGTCTGTGCAGTCAGCCAGGCAACTTTAGCTTTGTTTGCGGCACGAAAAACTTCAGGAATTGTTGTCAATATTGGTTTTAACCAAACATCTGTTGTACCAATTTTACATGGTAAGATAATGCACAATGTGGGTGTGGAAACTGTGGGAGTTGGAGCTTTAAAGCTTACTGGATACCTTCGGGAGCAAATGCAGCAGAGAAATCTACGTTTTTCTTCGTTATACACAGTCCGCACATTGAAAGAGAACCTTTGTTATGTTGCTATTGACTATGAAGCTGAATTACGTAAAGATACAGAAGGCTCGTTTGAAGTTCCTGTTGAGGGTTGGTTTACTCTTAAGCAAGAGCGCTTTCAAACAGGAGAGATTTTATTTCAGCCACGCATTGCAGGACTGAGTGCAACGGGTTTGCATCAAGCGGTGGCACTTTGCATTGACCATTGCCATGCTGCAGGATTAACCCCTGATGAGACTTGGTTCAAGACCATTGTTTTGGCTGGGGGTACTGCTTGTTTACCAGGACTAGTAGAAAGATTAGAGAAAGAACTACGCGTTATTCTTCCCTCGTCCCTATCCAATGGAATACGAGTTATTCCACCCCCATATGGCGCAGATTCCGCGTGGTATGGGGCACAACTTCTCAGCAACTTGAGCACCTTTCCAAATTCCTGGTGCATCACAAAGAAGGAATTCAGACCAAAGTCCAGAAGAAACTTCATGTGGTGA	1437	43.35	MAFLLKKILESANPLNSSTSTSSSSSNYSISSHVSLSDQIIVCSSSTGEFDRIPLDIFMQILKLLGPKEAAKLTVICKSWKLIVSDNMFWISYLQNQQGPWDSMFFAETNLRSGYPLRTYPSRMQSFMHIYGQRAQVPGAIIIDGGSGYCKFGWSKYDSPSGRAATFLEFGNIESPMYSRLRHFFATIYSRMHVKSYTQPTVVSIPIIQSDNTQAAKTARRQLKEAIYSALFDMNVPSVCAVSQATLALFAARKTSGIVVNIGFNQTSVVPILHGKIMHNVGVETVGVGALKLTGYLREQMQQRNLRFSSLYTVRTLKENLCYVAIDYEAELRKDTEGSFEVPVEGWFTLKQERFQTGEILFQPRIAGLSATGLHQAVALCIDHCHAAGLTPDETWFKTIVLAGGTACLPGLVERLEKELRVILPSSLSNGIRVIPPPYGADSAWYGAQLLSNLSTFPNSWCITKKEFRPKSRRNFMW	478

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Armi1g00170	478	ProSiteProfiles	F-box domain profile.	47	93	IPR001810	GO:0005515(InterPro)
	Armi1g00170	478	Gene3D	-	187	469	-	-
	Armi1g00170	478	Gene3D	-	37	115	-	-
	Armi1g00170	478	SMART	actin-3	138	476	IPR004000	-
	Armi1g00170	478	PANTHER	ACTIN	148	469	IPR004000	-
	Armi1g00170	478	CDD	NBD-sugar-kinase-HSP70-actin	141	284	-	-
	Armi1g00170	478	SMART	fbox-2	53	93	IPR001810	GO:0005515(InterPro)
	Armi1g00170	478	Pfam	F-box domain	50	91	IPR001810	GO:0005515(InterPro)
	Armi1g00170	478	Gene3D	-	245	443	-	-
	Armi1g00170	478	SUPERFAMILY	F-box domain	46	108	IPR036047	GO:0005515(InterPro)
	Armi1g00170	478	SUPERFAMILY	Actin-like ATPase domain	139	260	IPR043129	-
	Armi1g00170	478	Pfam	Actin	311	469	IPR004000	-
	Armi1g00170	478	Gene3D	Actin; Chain A, domain 4	288	371	-	-
	Armi1g00170	478	SUPERFAMILY	Actin-like ATPase domain	254	468	IPR043129	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Armi1g00170	K16616	actin-related protein 8, plant

Event-related genes

Select	Gene_1	Gene_2	Event_name
	19389	Armi14g01654	Armi1g00170
	20163	Armi1g00170	Armi8g02851
	20164	Armi1g00170	Armi8g02852

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Armi	Armi-Chr1:3240529	Armi8g02852	Armi-Chr8:99227596	dispersed
	Armi	Armi-Chr1:3240529	Armi14g01654	Armi-Chr14:77954335	wgd
	Armi	Armi-Chr1:3240529	Armi8g02851	Armi-Chr8:99221318	wgd

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Armi1g00170	ACH	104	364	Cytoskeleton gene family	AT3G12110	31.365	1.60e-38	142.0
	Armi1g04578	ACH	38	168	Cytoskeleton gene family	AT5G56600	76.336	2.64e-77	224.0
	Armi2g02747	ACH	1	377	Cytoskeleton gene family	AT3G12110	97.082	0.0	768.0
	Armi4g00132	.	7	377	Cytoskeleton gene family	AT5G09810	37.696	8.17e-70	221.0
	Armi4g02037	ACH	1	377	Cytoskeleton gene family	AT5G09810	98.939	0.0	775.0
	Armi4g04020	ACH	1	377	Cytoskeleton gene family	AT3G12110	96.021	0.0	761.0
	Armi5g00991	ACH	10	372	Cytoskeleton gene family	AT3G12110	35.714	1.52e-78	246.0
	Armi7g02229	ACH	1	128	Cytoskeleton gene family	AT2G19760	75.781	3.27e-75	218.0
	Armi7g02230	ACH	1	134	Cytoskeleton gene family	AT4G29340	77.612	6.40e-77	222.0
	Armi8g00100	ACH	1	134	Cytoskeleton gene family	AT4G29340	77.612	1.18e-75	219.0
	Armi8g00101	ACH	38	168	Cytoskeleton gene family	AT5G56600	75.573	3.70e-75	219.0
	Armi13g01708	ACH	8	376	Cytoskeleton gene family	AT5G09810	59.843	6.16e-160	452.0
	Armi14g01654	ACH	91	364	Cytoskeleton gene family	AT3G12110	32.423	4.95e-40	146.0
	Armi17g00359	.	1	377	Cytoskeleton gene family	AT5G59370	97.613	0.0	767.0
	Armi18g01295	.	1	377	Cytoskeleton gene family	AT5G09810	98.939	0.0	775.0