AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00173 ATGAAGATCACTGTAATGACCGCCGACGAACAAATCATTACTTTAGAAGTCGATCGCGATGAATCTGTTGAAAATCTGAAAGCTCTACTTGAAATTGAGTTTTGTGATTTGAATTTTGATGTGGTGTGTGTTTACAATAAGCAGTCTCAAGTACCATTACAGCAACAACAGCTGCTTTACAATGGGAAGGAGATGAGGAATGCTGAGACGCTTAGTCGTTTGGGTGTTACTGATGGAGATTTAGTAATGATGGTTTCGAATCCTTCTTCTTCTTCAAGGGGTTCTAGCAATGAAGTTAGCTTAAATCCAGATGGGTCCGCTGTAGACCCAGCTGCGTTCCAGCAGCAAGTGCGGAATAATTCAAATTTGATGGCCCAATTGTTTCAGAGTGATCCTGAGTTGGCACAAGTAATTCTCGGGAACGACTTGAATAAGTTGCAGGACCTCTTGAGAGTGCGTCACCGTCAGAGATCTGAGTTACGAAGGCAACAGGATGAAGAGATGGCGCTACTCTATGCAGACCCGTTTGACGTGGAAGCACAAAAGAAAATTGAAGCTGCAATCCGGCAGAAAGGTATTGATGAGAACTGGGCTGCTGCACTAGAACACAACCCTGAAGCTTTTGCAAGAGTGGTCATGTTGTATGTCGACATGGAAGTTAATGGTGTTCCCATGAAGGCCTTCGTTGATAGTGGAGCCCAATCAACTATAATATCAAAAAGCTGCGCGGAGCGTTTGGGATTGCTTAGGCTTTTAGACCAACGTTACAAGGGAATCGCTCAAGGAGTTGGTCAGTCAGAGATTCTTGGTCGGATACATGTTGCTCCAATTAAAATCGGGAATATCTTTTATCCGTGTTCCTTCTTGGTCTTGGATTCTCCGAATATGGAATTCCTCTTTGGATTGGATATGCTCCGTAAGCACCAATGCATAATTGATTTGAAAGACAATGTCTTGAGAGTTGGCGGAGGAGAGGTTTCTGTACCGTTTTTGCAAGAAAAGGACATCCCACAGCGTTTCTTGGATGAGGAGAGACAATTGAAGGAAGCTTCTAGCTCTGGACTTCAAGGTACATCTGGATCAGCGACACCGTTTGGAGGTCAATCTTCTGGACCCGTCAGCGGTGGTCCTACACAGGGGGCTGAATTTGAAGCCAAAATTGGGAAGCTTGTTGAACTAGGGTTTAGCAGAAGTGAAGTTATAGAAGCTCTGAAGCTTTTCGAAGGTAACGAGGATCAAGCAGCCGGATATCTTTTTGGCGGGTAA 1266 44.39 MKITVMTADEQIITLEVDRDESVENLKALLEIEFCDLNFDVVCVYNKQSQVPLQQQQLLYNGKEMRNAETLSRLGVTDGDLVMMVSNPSSSSRGSSNEVSLNPDGSAVDPAAFQQQVRNNSNLMAQLFQSDPELAQVILGNDLNKLQDLLRVRHRQRSELRRQQDEEMALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPMKAFVDSGAQSTIISKSCAERLGLLRLLDQRYKGIAQGVGQSEILGRIHVAPIKIGNIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKDNVLRVGGGEVSVPFLQEKDIPQRFLDEERQLKEASSSGLQGTSGSATPFGGQSSGPVSGGPTQGAEFEAKIGKLVELGFSRSEVIEALKLFEGNEDQAAGYLFGG 421
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00173 421 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 382 421 IPR015940 -
Armi1g00173 421 Coils Coil 146 166 - -
Armi1g00173 421 Gene3D Acid Proteases 192 338 IPR021109 -
Armi1g00173 421 Gene3D - 1 100 - -
Armi1g00173 421 MobiDBLite consensus disorder prediction 351 379 - -
Armi1g00173 421 Pfam Aspartyl protease 191 313 IPR019103 GO:0004190(InterPro)|GO:0006508(InterPro)
Armi1g00173 421 SUPERFAMILY Ubiquitin-like 1 96 IPR029071 -
Armi1g00173 421 SMART uba-6 383 420 IPR015940 -
Armi1g00173 421 MobiDBLite consensus disorder prediction 351 376 - -
Armi1g00173 421 Gene3D - 356 421 - -
Armi1g00173 421 SMART ubq-7 1 87 IPR000626 GO:0005515(InterPro)
Armi1g00173 421 MobiDBLite consensus disorder prediction 85 108 - -
Armi1g00173 421 MobiDBLite consensus disorder prediction 85 103 - -
Armi1g00173 421 FunFam DNA damage inducible 1 homolog 2 191 338 - -
Armi1g00173 421 CDD RP-DDI 198 321 IPR019103 GO:0004190(InterPro)|GO:0006508(InterPro)
Armi1g00173 421 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 418 - -
Armi1g00173 421 ProSiteProfiles Ubiquitin domain profile. 1 91 IPR000626 GO:0005515(InterPro)
Armi1g00173 421 Pfam Ubiquitin family 46 87 IPR000626 GO:0005515(InterPro)
Armi1g00173 421 SUPERFAMILY UBA-like 368 421 IPR009060 GO:0005515(InterPro)
Armi1g00173 421 Pfam UBA-TS-N domain 384 418 IPR015940 -
Armi1g00173 421 CDD UBA-scDdi1-like 384 419 - -
Armi1g00173 421 SUPERFAMILY Acid proteases 199 314 IPR021109 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00173 K11885 DNA damage-inducible protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr14:77871026 Armi1g00173 Armi-Chr1:3271661 dispersed
Armi Armi-Chr14:77872181 Armi1g00173 Armi-Chr1:3271661 dispersed
Armi Armi-Chr1:3271661 Armi2g03829 Armi-Chr2:177270890 dispersed