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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00185 ATGAAGCTCGTCAGGTTTTTGATGAAGTTGAACAACGAAACAGTCTCGATCGAGCTCAAGAATGGGACGGTTGTACATGGAACTATCACAGGTGTTGATATTAGCATGAACACACACTTGAAGACGGTGAAGTTGACACTGAAGGGGAAAAATCCCGTAACCCTAGATCATTTGAGCGTGAGAGGCAATAACATTCGTTACTATATACTTCCCGACAGCTTGAATCTGGAGACCTTGCTAGTCGAAGAAACACCTCGAGTCAAGCCCAAGAAGCCAACTGCAGGGAGGCCTGTGGGACGTGGTCGGGGAAGAGGACGAGGCCGTGGACGTGGGCGTGGTCGTTAG 345 49.28 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRGR 114
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00185 114 SMART Sm3 5 70 IPR001163 -
Armi1g00185 114 Pfam LSM domain 5 69 IPR001163 -
Armi1g00185 114 SUPERFAMILY Sm-like ribonucleoproteins 4 113 IPR010920 -
Armi1g00185 114 MobiDBLite consensus disorder prediction 93 114 - -
Armi1g00185 114 CDD Sm-D1 2 93 IPR034102 GO:0000387(InterPro)
Armi1g00185 114 FunFam Small nuclear ribonucleoprotein Sm D1 1 82 - -
Armi1g00185 114 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 109 IPR027141 GO:0000243(PANTHER)|GO:0000387(PANTHER)|GO:0003723(PANTHER)|GO:0005682(PANTHER)|GO:0005685(PANTHER)|GO:0005686(PANTHER)|GO:0005687(PANTHER)|GO:0005689(PANTHER)|GO:0006396(InterPro)|GO:0034715(PANTHER)|GO:0034719(PANTHER)|GO:0071011(PANTHER)|GO:0071013(PANTHER)|GO:0097526(PANTHER)
Armi1g00185 114 MobiDBLite consensus disorder prediction 82 114 - -
Armi1g00185 114 Gene3D - 50 82 - -
Armi1g00185 114 Gene3D - 1 49 - -
Armi1g00185 114 ProSiteProfiles Sm domain profile. 2 74 IPR047575 GO:0003723(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00185 K11087 small nuclear ribonucleoprotein D1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr16:69532864 Armi1g00185 Armi-Chr1:3467149 dispersed