AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00197 ATGGCGGAAACTGAGACGTTTGCTTTCCAAGCAGAGATCAACCAGCTGTTGAGTCTAATTATCAACACTTTCTACAGCAACAAGGAGATCTTCCTTCGTGAGCTTGTTAGCAATGCCTCCGATGCTCTGGACAAGATTCGTTTCGAGAGCTTGACTGATAAGAGCAAGCTAGATGCTCAACCAGAGCTGTTCATCCACATTATTCCCGATAAGGCCAACAACACACTCACCATCATTGACAGTGGAATTGGAATGACAAAAGCAGATTTGGTGAATAATCTGGGTACCATTGCTCGATCTGGTACCAAGGAATTCATGGAAGCCATTGCTGCTGGTGCTGATGTTAGCATGATTGGACAATTTGGTGTTGGTTTCTACTCAGCTTATCTGGTTGCCGAGAAAGTCATTGTCACCACAAAACACAACGATGATGAGCAGTATGTTTGGGAGTCACAGGCTGGTGGTTCATTCACAGTAACCCGCGATGAAGGTGAACCCCTTGGCAGGGGTACAAAAATTGTCCTTTATCTCAAGGAGGACCAGCTTGAGTACCTTGAGGAGCGCAGGCTTAAGGATCTAATCAAGAAACACTCTGAGTTCATTAGTTACCCAATCTCCCTTTGGGTCGAGAAAACAACCGAGAAGGAAATATCCGATGATGAGGATGAAGAAGAGAAGAAAGACGAGGAAGGCAAAGTCGAGGAGGTGGATGAAGAGAAGGAGAAGGAAGAGAAGAAAAAGAAGAAGATTAAAGAAGTGTCACATGAATGGTCTTTGATGAACAAACAAAAACCCATCTGGATGAGGAAGCCAGAGGAGATCACTAAGGAAGAGTATGCAGCTTTCTACAAAAGCCTCACCAACGATTGGGAGGAGCACTTGAACGTGAAGCACTTTTCGGTCGAAGGACAGCTGGAATTCAAGGCTGTTCTTTTCGTACCTAAGCGTGCCCCTTTTGACCTGTTTGACTCGAAGAAGAAGCCCAACAACATCAAGCTTTACGTTCGTCGTGTCTTTATCATGGACAACTGTGAAGAGATCATACCCGAATACCTCAGTTTCGTCAAGGGTATTGTGGATTCCGAGGATCTTCCCCTGAACATCTCAAGAGAGATGTTGCAGCAGAACAAGATCCTGAAAGTTATTCGCAAGAATTTGGTGAAAAAATGCATCGAGCTTTTCCAGGAGATTGCGGAGAACAAGGAGGATTACGTCAAGTTCTACGAAGCCTTCTCCAAGAATCTCAAACTGGGTATCCACGAAGATTCCACAAACAAGACCAAACTCGCCGAGTTGCTCCGATACCACTCCACCAAGAGTGGAGACGAGATGACTAGCTTGAAGGACTACGTGACACGAATGAAGGATGGCCAAAACGAAATCTTTTACATCACCGGTGAGAGCAAAAAGGCCGTAGAGAATTCCCCATTCCTCGAAAAGCTAAAGAAGAAGGGATACGAAGTCCTCTACATGGTCGATGCCATCGACGAGTACTCCGTCGGCCAATTGAAAGAATTCGAAGGAAAGAAGCTGGTTTCCGCCACCAAGGAAGGTCTAAAGCTTGAAGAGACCGAAGACGAAAAGAGAAAACAAGAATCCTTGAAGGAGAAATTCGAGGGTCTATGCAAGGTGATCAAGGACGTATTAGGCGACAAGGTCGAGAAAGTGGTCGTATCTGACCGAGTCGTCGACTCTCCATGCTGTTTAGTCACCGGCGAGTACGGATGGACGGCCAACATGGAACGAATCATGAAGGCACAAGCTCTACGCGATGCAAGCATGGCTGGATACATGTCTAGCAAAAAGACAATGGAAATCAACCCGGAGAACGCAATCATGGAGGAGCTGAGGAAGCGGGCGGATGCCGATAAAAACGACAAATCCGTTAAGGATTTGGTTCTGTTGCTGTTCGAAACCGCTTTGTTGACATCTGGGTTTAGCCTTGATGAGCCAAACACATTTGGCAACAGGATTCATAGGATGTTGAAGCTTGGATTGAGCATCGATGACGATGCAGGTGAGGGTGATGCCGATATCCCTGCTCTTGAAGAAGCAGACATCGATGCTGAAGGCAGCAAGATGGAGGAAGTCGACTAA 2097 46.21 MAETETFAFQAEINQLLSLIINTFYSNKEIFLRELVSNASDALDKIRFESLTDKSKLDAQPELFIHIIPDKANNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEAIAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDEGEPLGRGTKIVLYLKEDQLEYLEERRLKDLIKKHSEFISYPISLWVEKTTEKEISDDEDEEEKKDEEGKVEEVDEEKEKEEKKKKKIKEVSHEWSLMNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLNVKHFSVEGQLEFKAVLFVPKRAPFDLFDSKKKPNNIKLYVRRVFIMDNCEEIIPEYLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCIELFQEIAENKEDYVKFYEAFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDEMTSLKDYVTRMKDGQNEIFYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYSVGQLKEFEGKKLVSATKEGLKLEETEDEKRKQESLKEKFEGLCKVIKDVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDASMAGYMSSKKTMEINPENAIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFGNRIHRMLKLGLSIDDDAGEGDADIPALEEADIDAEGSKMEEVD 698
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00197 698 Gene3D - 430 516 - -
Armi1g00197 698 Coils Coil 521 541 - -
Armi1g00197 698 Coils Coil 219 256 - -
Armi1g00197 698 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 3 671 IPR001404 GO:0005524(InterPro)|GO:0005829(PANTHER)|GO:0005886(PANTHER)|GO:0006457(InterPro)|GO:0006457(PANTHER)|GO:0016887(InterPro)|GO:0032991(PANTHER)|GO:0034605(PANTHER)|GO:0048471(PANTHER)|GO:0050821(PANTHER)|GO:0051082(PANTHER)|GO:0051082(InterPro)|GO:0140662(InterPro)
Armi1g00197 698 MobiDBLite consensus disorder prediction 216 237 - -
Armi1g00197 698 SMART HKATPase-4 27 181 IPR003594 -
Armi1g00197 698 Pfam Hsp90 protein 183 677 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Armi1g00197 698 MobiDBLite consensus disorder prediction 214 247 - -
Armi1g00197 698 FunFam Heat shock protein 90 alpha 430 516 - -
Armi1g00197 698 PIRSF HSP90-HTPG 1 698 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Armi1g00197 698 SUPERFAMILY Ribosomal protein S5 domain 2-like 262 517 IPR020568 -
Armi1g00197 698 PRINTS 90kDa heat shock protein signature 26 48 IPR020575 -
Armi1g00197 698 PRINTS 90kDa heat shock protein signature 169 186 IPR020575 -
Armi1g00197 698 PRINTS 90kDa heat shock protein signature 5 25 IPR020575 -
Armi1g00197 698 PRINTS 90kDa heat shock protein signature 93 110 IPR020575 -
Armi1g00197 698 PRINTS 90kDa heat shock protein signature 118 140 IPR020575 -
Armi1g00197 698 PRINTS 90kDa heat shock protein signature 187 205 IPR020575 -
Armi1g00197 698 PRINTS 90kDa heat shock protein signature 75 92 IPR020575 -
Armi1g00197 698 FunFam Heat shock protein 90 alpha 517 667 - -
Armi1g00197 698 MobiDBLite consensus disorder prediction 675 698 - -
Armi1g00197 698 ProSitePatterns Heat shock hsp90 proteins family signature. 25 34 IPR019805 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Armi1g00197 698 FunFam Heat shock protein 90 alpha 261 429 - -
Armi1g00197 698 FunFam Heat shock cognate protein 2 227 - -
Armi1g00197 698 Gene3D - 517 667 IPR037196 -
Armi1g00197 698 SUPERFAMILY HSP90 C-terminal domain 541 662 IPR037196 -
Armi1g00197 698 Gene3D - 1 225 IPR036890 -
Armi1g00197 698 Gene3D - 261 429 - -
Armi1g00197 698 CDD HATPase-Hsp90-like 14 201 IPR020575 -
Armi1g00197 698 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 145 - -
Armi1g00197 698 SUPERFAMILY ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase 4 212 IPR036890 -
Armi1g00197 698 Hamap Chaperone protein HtpG [htpG]. 2 663 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00197 K04079 molecular chaperone HtpG
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:3712098 Armi4g04557 Armi-Chr4:146710877 dispersed
Armi Armi-Chr1:3712098 Armi1g00199 Armi-Chr1:3731334 proximal
Armi Armi-Chr1:3712098 Armi14g01628 Armi-Chr14:77731277 wgd
Armi Armi-Chr1:3712098 Armi8g02835 Armi-Chr8:99039309 wgd