AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00201 ATGAGCAGCGATCTCAAGTCCAAATTCCTGCAAGTTTACGATTCTCTGAAATCTGAACTAATTCATGATCCGTCATTTGAATTCGACGACGATTCTCGTCAGTGGATCGAACGTATGCTCGACTACAATGTACCTGGAGGAAAGTTGAACCGAGGCCTCTCTGTTGTGGACAGCTACAAGTTGCTTAAAGGGGAAGAACTAACAGACGACGAAGTTTTTCTTTCTTGTGCCCTTGGTTGGTGCATTGAATGGCTTCAAGCTTATTTTCTTGTACTTGATGACATTATGGACGAGTCCCATACACGCAGAGGTCAACCCTGTTGGTTTAGATTACCCAAGGTTGGTATGATTGCAGTGAATGATGGAGTTGTTCTTCGCAACCATATCCCCAGAATCCTAAAGAAACATTTCCGAGGGAAGGCTTATTATGCGGATCTACTGGACCTCTTCAACGAGGTCGAATTCCAGACGGCCTCCGGACAAATGATTGATTTGATCACTACACTTGTTGGAGAGAAAGATCTCTCCAAGTATTCTTTGTCTATTCACCGTCGGATTGTTCAGTACAAAACTTCGTATTACTCATTTTACCTTCCGGTTGCGTGCGCACTCCTTATGTTTGGAGAGAATCTGGACGATCATGTTCAAGTGAAAAACGTCCTCGTTGAAATGGGTACCTATTTTCAAGTGCAGGATGATTATCTCGATTGTTTCGGTGCTCCTGAGGTGATTGGCAAGATTGGAACAGATATCGAAGACTTCAAGTGTTCCTGGTTGGTTGTGAAAGCATTGGAACTTGCCAATAAGGAGCAAAAGAAACTTCTACACGAGAACTATGGAAGAAAGGATCCGGCTAGCGTAGCAAAAGTGAAGGAATTATACAATACTCTCAACCTTCAGGGCGTGTTTGAAGATTACGAGAACAAGAGTCACGAAAAGTTGATCAAATCGATTGAAAGTCACCCAAGCAAAGCAGTACAAGCAGTGTTGAAATCTTTCTTAGGGAAGATATACAAGAGGCAAAAATAA 1029 42.57 MSSDLKSKFLQVYDSLKSELIHDPSFEFDDDSRQWIERMLDYNVPGGKLNRGLSVVDSYKLLKGEELTDDEVFLSCALGWCIEWLQAYFLVLDDIMDESHTRRGQPCWFRLPKVGMIAVNDGVVLRNHIPRILKKHFRGKAYYADLLDLFNEVEFQTASGQMIDLITTLVGEKDLSKYSLSIHRRIVQYKTSYYSFYLPVACALLMFGENLDDHVQVKNVLVEMGTYFQVQDDYLDCFGAPEVIGKIGTDIEDFKCSWLVVKALELANKEQKKLLHENYGRKDPASVAKVKELYNTLNLQGVFEDYENKSHEKLIKSIESHPSKAVQAVLKSFLGKIYKRQK 342
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00201 342 ProSitePatterns Polyprenyl synthases signature 2. 224 236 IPR033749 -
Armi1g00201 342 CDD Trans-IPPS-HT 31 340 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Armi1g00201 342 SUPERFAMILY Terpenoid synthases 17 341 IPR008949 -
Armi1g00201 342 ProSitePatterns Polyprenyl synthases signature 1. 90 104 IPR033749 -
Armi1g00201 342 PANTHER FARNESYL-PYROPHOSPHATE SYNTHETASE 4 342 IPR039702 GO:0004161(PANTHER)|GO:0004337(PANTHER)|GO:0005737(PANTHER)|GO:0008299(InterPro)|GO:0016765(InterPro)|GO:0045337(PANTHER)
Armi1g00201 342 SFLD Polyprenyl Transferase Like 6 340 - -
Armi1g00201 342 Pfam Polyprenyl synthetase 34 296 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Armi1g00201 342 Gene3D Farnesyl Diphosphate Synthase 1 341 IPR008949 -
Armi1g00201 342 SFLD Isoprenoid Synthase Type I 6 340 - -
Armi1g00201 342 FunFam Farnesyl pyrophosphate synthase 1 341 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00201 K00787 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
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Event-related genes

Select Gene_1 Gene_2 Event_name
19370 Armi14g01626 Armi1g00201
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:3759478 Armi14g01626 Armi-Chr14:77715805 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Armi1g00201 ACH 42 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 77.259 0.0 560.0
Armi14g01626 ACH 42 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 76.385 0.0 557.0