AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00208 ATGAACAACGTCGGCGAGTTCAGATACGTGATCGATCAAAATGCCTACATCAAGCTCATCCTCCATGCTTTAAAGCACAAAACCTCCTCCGTTAACGGCGTCCTCATCGGCCGACTCTCAGGCGATGTAGTGGAAATCACTGAATCGGTTCCTCTTTTCCACTGTTCTCAGATCGGACTTCTACCTCCTCTTGAGATCGCTTTAATTATGATAGAAGAGTATTACAGTGCACAGGGATTGAGTATTGTGGGATATTTCCACGCCAATGAGCGATTCGATGATCTCGAGCTTGGTACCGTTGCGAAGAATATTGCTGATCACATTTATCGTTATTTTCCTCAAGCGGCGGTGCTATTGCTAGATAACAAAAAACTTGGAGCTTTGAGAAACAAGAAGGATACGGCTCCTGTAATGCAGCTTTATACACGAGACTCTTCTAGAAATTGGAACGTAGCCAATCGGATTACCACCAAGGAGCCATCTGCCAATATTCTCCTCATGGATTTCACTTCATCCGAGAAATGGAACGATATTGTAGACTTCGATGACCACCTTGACGACATAAGCAAGGATTGGTTGAACTCTGAACTCTTCAAGTAA 600 44.0 MNNVGEFRYVIDQNAYIKLILHALKHKTSSVNGVLIGRLSGDVVEITESVPLFHCSQIGLLPPLEIALIMIEEYYSAQGLSIVGYFHANERFDDLELGTVAKNIADHIYRYFPQAAVLLLDNKKLGALRNKKDTAPVMQLYTRDSSRNWNVANRITTKEPSANILLMDFTSSEKWNDIVDFDDHLDDISKDWLNSELFK 199
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00208 199 Gene3D Cytidine Deaminase, domain 2 6 90 - -
Armi1g00208 199 Pfam Uncharacterised protein family (UPF0172) 9 197 IPR005366 GO:0072546(InterPro)
Armi1g00208 199 ProSiteProfiles MPN domain profile. 9 140 IPR037518 -
Armi1g00208 199 CDD MPN-UPF0172 11 194 IPR005366 GO:0072546(InterPro)
Armi1g00208 199 PANTHER ER MEMBRANE PROTEIN COMPLEX 9 197 IPR005366 GO:0072546(PANTHER)|GO:0072546(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00208 K23569 ER membrane protein complex subunit 8/9