AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Armi1g00216 | ATGCTTCGATTGCCTTCAATTCAAGTATGTTGTTTAACAGAAAAGAAGCATCAAGATTCTTCGAGGAAATCAATGAAGTTTGGAGAATCAAATTCAAGAACAACAACTCACAGAAAAGGTTATTTTCATCAAGAACGCAAACCCCAGAAGGTGAATTTGGAAATTTCGCCTCATAGAGCTGTGTCTGCGGTGAGGTTAATGCGGATAGAGTTCGGTGGTGCCTTTGCTGACCTTTTAAACGAGAAAGGGAAGGGGTCAGGTGATAACGAGATGGGATACGTTGAAAGAACTCTCGGGTTTTGCACCCGAGATTTGGATGATAGAGATCTCCGATTGGTAACGGATATTGTTGGAGGTACAATTCGTTGGAGAAAATATCTTGACTATTTGATTTTGTCCTTGTGCCATGATCCAAACGTGTTTAATCGTATGGAGCCTCTACTATTACAGATTCTTCGGATTGGATTCTATGAGATCGTAAAGCTAGAGTCCCCTTCATATGCGGTTGTAGATGAGAACGTGAAGCTTGCAAAAATTGCCCTTAGGCCGGGTGCTGGTAACATGGTCAACGGAATTCTGAGGAAGCTCGTTTTGCTTAAGGAAACCGATTCTCTTCCTTCACCTCAACTGGAGGGCGATGATCGTGCACAAGCACGTGCTCTTGCTACTCTTTATTCTCACCCAGTTTGGATGGTGAGGCGTTGGACAAAATACCTTGGACGTGAAGAAGCTATTAAGTTGATGGTGTGGAATAACAACTATCCGAGTTTTAGTTTGAGGGCTAACAGAGGCAAAGGTTTTACACGATCAGAGCTCGTGTCACGACTTGAAACATTGAAGGTACCCTATGAGCTCTCTCCTTACTTGGATGATTTTGTTCGTATCAGCACCGGAATGCAGAGTGTTATACAAGATGGACTACTAAAAGATGGTTTATGTTCAGTCCAAGATGAGAGTGCAGGTTTGGTGGTTTCCATTCTTGATCCGCAACCTGGAGAGACAATAATCGACTGTTGTGCTGCTCCTGGAGGGAAGACCCTCTTCATGGCGGCCTGTTTGAATGGCAAAGGCATGGTAATGGCAATTGACATAAATAAAGGACGTTTGAGGATCCTCAAAGAGACAGCCAAACTGCAGAAACTTGATGATGTCATCACTACGGTTCATGCCGATCTTCGTACATTTCCTGAGAATAACCATGAGGCATATGAAAAAGTGTTGCTAGATGCTCCATGTTCCGGACTTGGTGTTCTTTCCAAGAGAGCAGATTTACGCTGGAATAGGAAGTCGGAAGATATGGAAGAACTTAAAAGTTTGCAAGATGAACTTCTTGACGCAGCTTCCATGTTGGTTAAACCTGGTGGAGTGCTAGTATACAGCACGTGTTCGATTGATCCTGAAGAGAATGAAGAGAGGGTGGCTGCGTTTCTTCTTAGGCATCCGGAATACAACGTAGATTCGGCAGAGAGATACATATCGCCTGAATTTTCAACCGAGCAGGGTTACTATTTCTCTAGCCCGGTGAAACATTCTCTTGATGGAGCATTTGCAGCACGACTCATTCGTCGCTCGTGA | 1575 | 43.87 | MLRLPSIQVCCLTEKKHQDSSRKSMKFGESNSRTTTHRKGYFHQERKPQKVNLEISPHRAVSAVRLMRIEFGGAFADLLNEKGKGSGDNEMGYVERTLGFCTRDLDDRDLRLVTDIVGGTIRWRKYLDYLILSLCHDPNVFNRMEPLLLQILRIGFYEIVKLESPSYAVVDENVKLAKIALRPGAGNMVNGILRKLVLLKETDSLPSPQLEGDDRAQARALATLYSHPVWMVRRWTKYLGREEAIKLMVWNNNYPSFSLRANRGKGFTRSELVSRLETLKVPYELSPYLDDFVRISTGMQSVIQDGLLKDGLCSVQDESAGLVVSILDPQPGETIIDCCAAPGGKTLFMAACLNGKGMVMAIDINKGRLRILKETAKLQKLDDVITTVHADLRTFPENNHEAYEKVLLDAPCSGLGVLSKRADLRWNRKSEDMEELKSLQDELLDAASMLVKPGGVLVYSTCSIDPEENEERVAAFLLRHPEYNVDSAERYISPEFSTEQGYYFSSPVKHSLDGAFAARLIRRS | 524 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Armi1g00216 | 524 | PANTHER | NOP2 YEAST -RELATED NOL1-NOP2-FMU SUN DOMAIN-CONTAINING | 106 | 523 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Armi1g00216 | 524 | FunFam | 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB | 214 | 318 | - | - | |
| Armi1g00216 | 524 | ProSiteProfiles | SAM-dependent MTase RsmB-NOP-type domain profile. | 247 | 523 | IPR001678 | GO:0008168(InterPro) | |
| Armi1g00216 | 524 | NCBIfam | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 103 | 523 | IPR004573 | GO:0006364(InterPro)|GO:0008649(InterPro) | |
| Armi1g00216 | 524 | PRINTS | RNA (C5-cytosine) methyltransferase signature | 404 | 416 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Armi1g00216 | 524 | PRINTS | RNA (C5-cytosine) methyltransferase signature | 505 | 522 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Armi1g00216 | 524 | PRINTS | RNA (C5-cytosine) methyltransferase signature | 336 | 346 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Armi1g00216 | 524 | PRINTS | RNA (C5-cytosine) methyltransferase signature | 454 | 470 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Armi1g00216 | 524 | PRINTS | RNA (C5-cytosine) methyltransferase signature | 307 | 321 | IPR023267 | GO:0001510(InterPro)|GO:0008173(InterPro) | |
| Armi1g00216 | 524 | Pfam | 16S rRNA methyltransferase RsmB-F | 325 | 520 | IPR049560 | - | |
| Armi1g00216 | 524 | Pfam | Methyltr-RsmF-B-like, ferredoxin-like domain | 227 | 298 | IPR054728 | - | |
| Armi1g00216 | 524 | Gene3D | Sun protein; domain 3 | 219 | 320 | - | - | |
| Armi1g00216 | 524 | FunFam | Ribosomal RNA small subunit methyltransferase B | 319 | 523 | - | - | |
| Armi1g00216 | 524 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 219 | 522 | IPR029063 | - | |
| Armi1g00216 | 524 | FunFam | Ribosomal RNA small subunit methyltransferase B | 56 | 206 | - | - | |
| Armi1g00216 | 524 | SUPERFAMILY | NusB-like | 94 | 231 | IPR035926 | - | |
| Armi1g00216 | 524 | Pfam | NusB family | 94 | 196 | IPR006027 | GO:0003723(InterPro)|GO:0006355(InterPro) | |
| Armi1g00216 | 524 | Gene3D | - | 61 | 218 | IPR035926 | - | |
| Armi1g00216 | 524 | PRINTS | Viridiplantae FMU-related RCMT signature | 204 | 217 | IPR023268 | - | |
| Armi1g00216 | 524 | PRINTS | Viridiplantae FMU-related RCMT signature | 64 | 87 | IPR023268 | - | |
| Armi1g00216 | 524 | PRINTS | Viridiplantae FMU-related RCMT signature | 481 | 493 | IPR023268 | - | |
| Armi1g00216 | 524 | PRINTS | Viridiplantae FMU-related RCMT signature | 88 | 104 | IPR023268 | - | |
| Armi1g00216 | 524 | CDD | AdoMet-MTases | 334 | 460 | - | - | |
| Armi1g00216 | 524 | Gene3D | Vaccinia Virus protein VP39 | 321 | 524 | IPR029063 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Armi1g00216 | K03500 | 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Armi | Armi-Chr1:3998047 | Armi9g01986 | Armi-Chr9:52376982 | dispersed |