AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00222 ATGGAAAGAGATGGTGTTTGGATACCCCTGACCCCAGGAAAGCCAATTCCCACTAGATTAGGGTTAGGGCTAGGGTTAGGGTTGCATTCGGTTCAATCGATGGGAGGTCGACATAACTGCAAGGCAGCATGTATTTCTGGACAAGGGACTGGAATCGAGAATCTAAACGAGGCATTTTCGTTTATAGGTTCTTTAAATGCTACTGGATATTTGGATAGGAATGGAATTAATGAGATGTATGAATTGAAGACTGGCGTTCATGAACATGACGCGGCTTCGGGTGTGGCTGGAAAGGATCCTGAAAGCAATGCAGCGGATCAGCATGACACAAGCTGTGTACGAGAGGAGGCAGTCAAAGTATCTCATTCTGAGTTCGACACTAAAAACGCACATGGTGTTCATGAGTCACAAGCTGGTATTGGCTCAGTTCCTTCACCCGAGACAAAAAATAGCAGGAAAAGGCGTAATGATGGTATCGACATGAACAAGAAGCCAAGTCAAAGACCCCGAATGAAAAAACACAGGCCTAAAATATTAGATGATAGCAAACCGAAGAAAGTCCCAAAGGCTCAAACTCCACGGGCTTCGACCCCGAGACCAAAAACTCCAAAACCCGTAACTCCAAATCGGGTACAAGAGAGGAGGAAGCCGGCAAGAAAGAACACATTCACAAGATCAACCAGTTGTATGCAATGCTCAACTAGTTATGGCTATAAAGATGTTGTGCAAGATGCCCAATCAGCTTCTACGTCATCCATAATCGTTGTTAAGTCGTGCAAACGTTCGTTGGATTTTAACCATCATCTAGTTGACAGAGAGTCTCGTTATGTGTCAAAATCACATGAACAACCTCAGAGCTTTAATTATGACCTTGGAAAATATAGTTATTTCGGAAAGATTGTTACTTCCAAGAGAAATACACCGAGGAGGAGTAGGTTTCAAAAGAAGTGTCTTAAAGCTTCAGAGGATTTGTTGGGAGATAATAACAACGAGCAATGCCATCAAGATATTTCGGTTGTAAGAAATCAAGAACTAGCCGAAACACATGTCAGAAGGTTTGTTTACTTTTATCAGCGCCGAAAGAAAAGCATACCTACATTGCAAGTATATAAGAGGAAATTTAGAGCAAATCAGTGTCTACAAAATAGTAAAAAAAGTGGACCTAATTTTCCAAGTATATTCAAGAAACAAAGGGCAAAGAGAAGAAAGGCGACAATGAACGGAAATTGTTGGTACATCAAGGCTTTTGAAGATGGCAAGAATCATGTGAGAAGATCACATAGAAAGCACATACAGACCACTAGAAAAAGTGTACATAATAAGGTCAAAAAATCCAAAGACCACAAAGGAGTGGTGAAACCCAATCTTCATACTGACGAAAGGTTTCCTCATGTGTTTTTAACCAAGAAAAGGAAGCGATCAATACAACACACTCGTAGGAGAGAAAATATCATGGACTTGCCTATTTTTAAAGCAATGCCATTGCCTTATGAAAGTGAAAAAAGGAGAGAAAATATCATGGACTTATCTATTTTTAAAGCAATGCCTTGTGAAAGTGAAAAATGCCTTTCACAGCAAGAAGAAGATTTTCTAAAGATTGCGGAATGCTTCCCACTACAAGAGGTTCCAATCCAGACAATTGAGAGTTTTACCTCAGTACACCGGAATGTCCAACTAGTTGATAACTCTGTTGATGCTCTGAAGTCGCTCCAACTACAAGAGGTTCCTGTGCTTGAAAGTCAAAGTTTGGTACCCGGAGACCAAGATATCCCGCTTTCTAAAGAAGAGTTAAATAACTTGTATGTAAGAGAAATGGGGGAGTATGTAAGAAGGAAGCTGGAGAATCTAGACATCAATGGTCCATGCAAGGAACTTGTGGTACGGGATCGTAATTTCAGTAGGACACTTGTAAAGACAGATCCTCCCAAGAAGCGTAAAGTGCTTCCCAAGGTGAACCTCGATGAGGAGACATTGAGAGTGTGGAAGCTGCTGATGGAGAATGATGGAAGTGAACCAGTTGAAGAAATGGACACAGAGAAGGAGGAATGGTGGGAAAGACAGAGGAAAGTATTTCGTGGACGAGTGGATTCATTCATTGCCAAGATGCATCTTATCCAAGGTAACAGGCGTTTCTCACAATGGAAGGGCTCTGTAGTGGACTCGGTGGTTGGAGTTTATTTAACTCAAAACGTGTCAGACCATCTTTCAAGCTCGGCTTTCATGTCTCTAGCAGCAAGATTTCCAGTTAAGTCCAGTAGCAAAGAAGTTTGTGACCATGGTGATGTCGAAACTAGCCAAGAATTAGTCATAAGTAATACAGTAGTTGATGGGGGGTTCTCTATGAATAATGAAACAGAGAAGGATATGAGAACTTCATGTGCCGATGTAAGCGATGCGACTCCAACCGCGAAACCTGAACAAGAGGGGGTCTCAAATACATTTCTGGTTCAAGATAAGCCATGTGACGATGGAAATTCAAATGCTTTCAGGAAACTTCTGGACATAGAGGAGGTGGACTATCTAAAGCAATTTTATAGTTCCGGGAACGATGAATTGCCACTAAATGAGAGCAGAGAGAATGGGGATTTGATTGTGAGAAAAGAAGATGAAGAGCAAAGTGCAACATCTTTTGATTTGTCGATTTCTCATGAACCTTGTGCTACCATTTCTGATGTAAACGTGGGTTTATGTGAGACTTCGGTTTTCAGGAACAGAGAGAGGGAGGTGGTAGGGGAAAAGAATGGTGATAATGAGCATCTAAAGCATTGCGAAAGTGAATTTAAGGGAAAAGAGGGGGTTTCGAATCCATTTCCGATTCAAGATAAGCCGCTTGTCGATGGAAATTCAAATGCTTTCAGGAAACTTCCTGACATAGAGGAGGTGGACTATCTTAAGCACTTTTCTAGTTCCGGGAATGATGAATCACCACTTAACGCGAGCAGAGATAACGGGGATTTGAATGCGAGCAAAGAATGCGAAGAGCAAAGTGTAACATCTTTCGATTTGCCAACTTCTCATGAACCTTGTGCTACGATCTCTGATGTAGACGTGGGTTTATGTGAAATTTCAGTTTTCAGGAACATAGAGAGGGAGGTGGTAGGGGAAAAGAACGGAGGTGATGAGCATCTGAAGCATTTAGAAAGTGAACTTACGGGAAAAGAGGGGATTTCAAATCCAATTTTAGTTCAAGAGAAGCCGTGTTTCGATGGAAATTCAAATGCTTTCAGGACACTTCTCGACATAGAGGAGGTGGACTATCTCAAGCAATTTTATAGTTCCAGAAATGATGAATCACCACTAAACGAGAGCAGAGATAACGGGGTTCTGAATGCGAGCAAAGAAGCCGAAGATCAAAATGCAACGTCTTTTTATTTGCCGCATTCTTATGAACCTTGTCTTACCATCTCTGATGTAAACATGGGTTCATGTGAAATTTCAGTTTTCGGGAACATAGAGAGGGAGGTGGTAGGGGAAAAGAATGAAGGTAATGAGCGTCTTAACCATTCCGATGGTGAATTCTTAGTTCATCAAAAGGCAACGCCTGAAGAAGAACGGATAATTGTTGCTCCAGTTTGCACGCTAAATTCTGAAGACACCATTGAACAAAGCGTAGATGCAGTAAACAATCACCCGAGCATGAACGCAATCCCGTTAGACCCTCGAAGCACTGGAAAAAAGAAAAGCAGAAGTGAAGAAAAGCAAGAAACGAAGACTGACTGGGAAAGTTTGAGGAGAACGTATTGCAAAACCGGAGGAAAAGAAACCAATGAGAATAACATGGATGCAGTTGATTGGGATGCCGTTAGGCGTGCTACAGTTGAAGAAATTGCGGAAACTATAGTTGAAAGAGGAATGAATAACGTGTTAGCTGCACGGATAAAAGAGTTCTTAGAACGAATGGTTAAAGACCATGGAACTATTGATCTCGAGTGGTTAAGGGATGTCCCACCAGACAAGGCAAAGGAGTTCTTGCTGAGCATACAAGGAATTGGTTTGAAAAGTGTGGAGTGTGTGCGGCTTTTAACACTACATCATCTTGCTTTTCCTGTTGACACAAATGTCGGTAGGGTAGCCACACGTCTAGGGTGGGTTCCACTGCAGCCCCTCCCTGAAGAAGTTCAAATTCATCTTTTGAACGCGTACCCAATGATGGACTCCATTCAGAAATACCTCTTCCCCAGGCTATGCACACTTGATCAAAGAACATTATACGAGTTACATTATCAGTTGATCACGTTCGGAAAGGTCTTTTGTACCAAGAAAAGTCCAAATTGCAATGCATGTCCCATGAGAGCAGAGTGCAGACATTATGCAAGCGCATTTGCTAGTGCTAGGCTTGCCCTTCCTGGACCAAAAGAAAGTACCGTAACTTCAATCGTCCCAGCTGCAAATGAACAAAACCATTCAATGCTTAATACGCCACCATCATCCTTCGACTTAGAACTCGACACCTTGGGTTCAAGTTATCATGCTCAAAATACCGAACCCATAATTGAAGTTCCCCCATCTCCGGAGCCTGAAGACGCGTTGCCAATCATACGCGATATTGAAGATTACTACTGTGAATCGGATGATGAAATTCCCACCATCAGACTCAACACCGAAGAGTTCCGGGAGACTTTAAAGGATACTATAGACGTAAATAGTATTTCTCTCCCAGAGGCTGAAATGTCAAAAGCTCTAGTTGCGATAACCGCACAAGCTGCCTCCATTCCTGCGCCACGAATGAAGTATATAGCCAAGTTGAGGACTGTACACTATGTCTATGAGCTCCCAGACTACCATCCGAGTTTGGCTGAGTTTGACGAAAGGGAACACGATGATCCAACCCCGTACCTTCTAGCCATTTGGCTTCCAGGTGAAACCTCCAATTCGTTAGAATACAACAACGATCAAGAAGAAACGGTTAAAGGAACGGTCTTGATACCTTGTCGAACTGCAAATAGAGGGAAATTTCCCCTCAACGGAACATATTTTCAGGTTAATGAGGTGTTTGCGGATGATGAAACTAGTCAGATTCCGATGGACGTTCCAAGATGTCAGCTGTGGAATTTGTCAAGACGATATCTAGGTTGTGGGACATCTGCAACATCGATATTTAAAGCTCTTTCAACAAGTGATATTCAACGCTGCTTTTGGAAAGGATCGATATGTGTGAGAGGATTCAACAGAAAAACAAGGCAGCCGCGCCCTCTTCATCGAAGATTTCATATTTCGACAACCGCAGTTGCAGCAGAGAACAAAAGAACAGGGAAGAGATAA 5262 42.3 MERDGVWIPLTPGKPIPTRLGLGLGLGLHSVQSMGGRHNCKAACISGQGTGIENLNEAFSFIGSLNATGYLDRNGINEMYELKTGVHEHDAASGVAGKDPESNAADQHDTSCVREEAVKVSHSEFDTKNAHGVHESQAGIGSVPSPETKNSRKRRNDGIDMNKKPSQRPRMKKHRPKILDDSKPKKVPKAQTPRASTPRPKTPKPVTPNRVQERRKPARKNTFTRSTSCMQCSTSYGYKDVVQDAQSASTSSIIVVKSCKRSLDFNHHLVDRESRYVSKSHEQPQSFNYDLGKYSYFGKIVTSKRNTPRRSRFQKKCLKASEDLLGDNNNEQCHQDISVVRNQELAETHVRRFVYFYQRRKKSIPTLQVYKRKFRANQCLQNSKKSGPNFPSIFKKQRAKRRKATMNGNCWYIKAFEDGKNHVRRSHRKHIQTTRKSVHNKVKKSKDHKGVVKPNLHTDERFPHVFLTKKRKRSIQHTRRRENIMDLPIFKAMPLPYESEKRRENIMDLSIFKAMPCESEKCLSQQEEDFLKIAECFPLQEVPIQTIESFTSVHRNVQLVDNSVDALKSLQLQEVPVLESQSLVPGDQDIPLSKEELNNLYVREMGEYVRRKLENLDINGPCKELVVRDRNFSRTLVKTDPPKKRKVLPKVNLDEETLRVWKLLMENDGSEPVEEMDTEKEEWWERQRKVFRGRVDSFIAKMHLIQGNRRFSQWKGSVVDSVVGVYLTQNVSDHLSSSAFMSLAARFPVKSSSKEVCDHGDVETSQELVISNTVVDGGFSMNNETEKDMRTSCADVSDATPTAKPEQEGVSNTFLVQDKPCDDGNSNAFRKLLDIEEVDYLKQFYSSGNDELPLNESRENGDLIVRKEDEEQSATSFDLSISHEPCATISDVNVGLCETSVFRNREREVVGEKNGDNEHLKHCESEFKGKEGVSNPFPIQDKPLVDGNSNAFRKLPDIEEVDYLKHFSSSGNDESPLNASRDNGDLNASKECEEQSVTSFDLPTSHEPCATISDVDVGLCEISVFRNIEREVVGEKNGGDEHLKHLESELTGKEGISNPILVQEKPCFDGNSNAFRTLLDIEEVDYLKQFYSSRNDESPLNESRDNGVLNASKEAEDQNATSFYLPHSYEPCLTISDVNMGSCEISVFGNIEREVVGEKNEGNERLNHSDGEFLVHQKATPEEERIIVAPVCTLNSEDTIEQSVDAVNNHPSMNAIPLDPRSTGKKKSRSEEKQETKTDWESLRRTYCKTGGKETNENNMDAVDWDAVRRATVEEIAETIVERGMNNVLAARIKEFLERMVKDHGTIDLEWLRDVPPDKAKEFLLSIQGIGLKSVECVRLLTLHHLAFPVDTNVGRVATRLGWVPLQPLPEEVQIHLLNAYPMMDSIQKYLFPRLCTLDQRTLYELHYQLITFGKVFCTKKSPNCNACPMRAECRHYASAFASARLALPGPKESTVTSIVPAANEQNHSMLNTPPSSFDLELDTLGSSYHAQNTEPIIEVPPSPEPEDALPIIRDIEDYYCESDDEIPTIRLNTEEFRETLKDTIDVNSISLPEAEMSKALVAITAQAASIPAPRMKYIAKLRTVHYVYELPDYHPSLAEFDEREHDDPTPYLLAIWLPGETSNSLEYNNDQEETVKGTVLIPCRTANRGKFPLNGTYFQVNEVFADDETSQIPMDVPRCQLWNLSRRYLGCGTSATSIFKALSTSDIQRCFWKGSICVRGFNRKTRQPRPLHRRFHISTTAVAAENKRTGKR 1753
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00222 1753 MobiDBLite consensus disorder prediction 422 449 - -
Armi1g00222 1753 MobiDBLite consensus disorder prediction 1222 1239 - -
Armi1g00222 1753 MobiDBLite consensus disorder prediction 423 448 - -
Armi1g00222 1753 MobiDBLite consensus disorder prediction 1207 1239 - -
Armi1g00222 1753 SUPERFAMILY DNA-glycosylase 693 1439 IPR011257 GO:0003824(InterPro)|GO:0006281(InterPro)
Armi1g00222 1753 FunFam DNA glycosylase-AP lyase ROS1 1338 1446 - -
Armi1g00222 1753 Pfam RRM in Demeter 1638 1738 IPR028925 -
Armi1g00222 1753 CDD ENDO3c 1264 1377 IPR003265 GO:0006284(InterPro)
Armi1g00222 1753 MobiDBLite consensus disorder prediction 968 1001 - -
Armi1g00222 1753 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 102 1751 IPR044811 GO:0019104(InterPro)|GO:0035514(InterPro)|GO:0141166(InterPro)
Armi1g00222 1753 MobiDBLite consensus disorder prediction 174 188 - -
Armi1g00222 1753 MobiDBLite consensus disorder prediction 148 166 - -
Armi1g00222 1753 SMART endo3end 1249 1416 IPR003265 GO:0006284(InterPro)
Armi1g00222 1753 SMART ccc3 1417 1437 IPR003651 GO:0051539(InterPro)
Armi1g00222 1753 MobiDBLite consensus disorder prediction 102 131 - -
Armi1g00222 1753 MobiDBLite consensus disorder prediction 967 1001 - -
Armi1g00222 1753 MobiDBLite consensus disorder prediction 929 948 - -
Armi1g00222 1753 MobiDBLite consensus disorder prediction 91 225 - -
Armi1g00222 1753 Gene3D - 1346 1434 IPR023170 -
Armi1g00222 1753 Gene3D Hypothetical protein; domain 2 1262 1345 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00222 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:4075153 Armi3g00509 Armi-Chr3:11794529 dispersed
Armi Armi-Chr1:4075153 Armi6g00812 Armi-Chr6:15556966 transposed