AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00225 ATGGAAAATGGAATGATCGAGAATCCAGAACATAAGAGAAACATGTCCTCTAGAGAAATCGGCGATTCACGAGCAAGACAATCGGAGAAGATCGTCTACACCTACGGCGTCGACATTGTTTCCGGCGACTATATTGACTGTGAATCAGACGACGGAACATCTCAATGCACGACGAACATGGAAGAATCTGTCGCCGCCGTTGAATCGATCTTAAGGTACACATTCAACAATAAGAGTTTGTTAGAAGAAGCCTTGACACATCCTTCTTACTCCGATAGTCCTTCCTATCAACGTCTCGAGTTCGTCGGCGATGCTGTCATTGGACTCGTCATTTCCAATTTTGTTTACGTCAATTATCCCGATCTCGATCCTGGACAACTATCTCTTCTCCGTTCCGCCAATATCAGCACCGAGAGACTCGCGAGGGTTGCCGTCAACCACGGCCTTTACAAATACGTCCGCCACAAGGCCGCCGCTCTCAATGACAAGGTTAGGGAATTTGTGATTGCGGTTCAGGAGGAAGATGATATAGTTGTTCACGGTGGACATATGAAAGCGCCTAAGGTTCTTGCTGATATTGTGGAATCGGTGGCTGCAGCTGTGTATATTGATTGTGAGTCAAACTTGCAAATCCTATGGATGATCATTAGAGAGCTACTGGAACCTATTGTGATGTTAAATGTCATCGAGAAACAACCGCAGCCGATTACATTGCTGTATGAGGCATGCCAGAAGGATCAGAAGGATGTTATTATACGGCACTGGAGGAAAGGTGACAGAAATATCGCTAGCGTTTATGTAGATGGCAGATTTGTTGCCTCTGGTTCTTCAGAGAACAAAGAGAATGCAAAGCTTCATGCAGCCGAGGCTGCTTTATCCAAGTTAACAAGCTCCCAAAGCAGCGACCCAATGGACATACAGATGTATGATGATTTTAATAAAACCATTGAGATTGAAGGTGCGAAACGGAGAGTACATGAGCTTTGCAATAAGAAAAGGTGGTCCAAGCCGATTTACAGAGTTGAGCAGCAGTCGGGACCCGCACATGAAAGAAGATATGTATCGTCGGTTAAAATTAAAGTCTGTGATGTGATTGTTGGTGTGGTGGGAGATGAAAAGCCGAGAGTTAAGGAAGCGGAGACTTCTGCAGCCGTGGCAATGCTTTGTGCTCTGCGAGAATCTGGATTCATATGA 1194 45.31 MENGMIENPEHKRNMSSREIGDSRARQSEKIVYTYGVDIVSGDYIDCESDDGTSQCTTNMEESVAAVESILRYTFNNKSLLEEALTHPSYSDSPSYQRLEFVGDAVIGLVISNFVYVNYPDLDPGQLSLLRSANISTERLARVAVNHGLYKYVRHKAAALNDKVREFVIAVQEEDDIVVHGGHMKAPKVLADIVESVAAAVYIDCESNLQILWMIIRELLEPIVMLNVIEKQPQPITLLYEACQKDQKDVIIRHWRKGDRNIASVYVDGRFVASGSSENKENAKLHAAEAALSKLTSSQSSDPMDIQMYDDFNKTIEIEGAKRRVHELCNKKRWSKPIYRVEQQSGPAHERRYVSSVKIKVCDVIVGVVGDEKPRVKEAETSAAVAMLCALRESGFI 397
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00225 397 Gene3D - 230 304 - -
Armi1g00225 397 ProSitePatterns Ribonuclease III family signature. 97 105 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Armi1g00225 397 SUPERFAMILY dsRNA-binding domain-like 306 391 - -
Armi1g00225 397 PANTHER DICER-RELATED 30 369 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Armi1g00225 397 FunFam Endoribonuclease dicer-like 1 58 227 - -
Armi1g00225 397 ProSiteProfiles Ribonuclease III family domain profile. 64 206 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Armi1g00225 397 Pfam Ribonuclease III domain 97 205 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Armi1g00225 397 Pfam Double-stranded RNA binding motif 235 295 IPR014720 -
Armi1g00225 397 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 320 393 IPR014720 -
Armi1g00225 397 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 221 297 IPR014720 -
Armi1g00225 397 SUPERFAMILY dsRNA-binding domain-like 188 296 - -
Armi1g00225 397 SMART DRBM-3 235 296 IPR014720 -
Armi1g00225 397 SMART DRBM-3 321 392 IPR014720 -
Armi1g00225 397 SMART riboneu5 79 231 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Armi1g00225 397 MobiDBLite consensus disorder prediction 1 23 - -
Armi1g00225 397 CDD RIBOc 79 224 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Armi1g00225 397 Gene3D - 319 393 - -
Armi1g00225 397 SUPERFAMILY RNase III domain-like 63 224 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Armi1g00225 397 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 321 391 - -
Armi1g00225 397 Gene3D Ribonuclease III domain 52 228 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00225 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:4106475 Armi1g00774 Armi-Chr1:19305148 dispersed