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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00227 ATGTCTTCCTCTATGTTTTCTATGTGTGCCTCCCATGGCGCCACATTAGCTCATGAACAAAGAACGATGTTTAGTGATTCAATGTACAACAAGTCGAATTTCTTCAATAAGCATCTTCTTCGTTTCAAGACGAATCGTGCATCATCTAACCTGGAACACTCGAGTGTGTCACAGAAGGGTAGAATCCAATGTAGGGCGATAGAGGTGGAAAGTAACCATACCTTTTTGAAAGGAGATAAATTTCAACTTCATGACGTGATTGAAGCGCAACAATTTGATAGAGATATTCTGAGTGCGATATTTGAAGTGGCACGCGAAATGGAAACGATCGAGAAGAAGTCACGTGGAAGCCAGCTTTTGAATGGTTATCTAATGGCTACTCTCTTTTACGAGCCTTCAACTAGGACTAGGCTTTCATTTGAGTCAGCAATGAAGCGGTTGGGTGGTGAAGTTTTGACAACAGAAAATGCACGAGAGTTCTCTTCTGCTGCGAAAGGAGAGACACTTGAAGATACGATTAGAACGGTGGAAGGGTACACGGACATAATTGTGATGAGGCACTTTGAAGGTGGTGCTGCTAGAAGAGCGGCCATGACAGCTAACATTCCAGTTATTAATGCTGGGGATGGTCCAGGACAGCATCCTACTCAGGCTCTTCTCGATGTATACACTATTGAAAGAGAGATAGGAAAGCTGGATGGAATTAAAGTTGGACTTGTTGGGGATCTTGCTAATGGCCGAACAGTTCGCTCTCTTGCATATCTTTTAGCCAAATATAATGATGTGAAGGTCTACTTTGTGTCACCAGAGGTTGTCAAGATGAAGGAGGACATAAAAGAGTACTTAACATCAAAAGGAGTTGAATGGGAAGAAAGTGCAGATCTAAAGGAGGTGGCATCGAGATGTGATGTGGTGTACCAGACCCGCATCCAGAGGGAACGTTTTGGAGAGAGAAGCGATCTGTATGACGAAGCTCGTGGCAAGTACATTGTTGATCGAGAAGTCTTGGATGTCATGCAGAAGCATGCTGTTGTCATGCATCCACTCCCAAGGCTAGATGAGATAACCGTGGATGTAGATGGGGATCCGAGGGCGGCCTACTTTAGACAAGCGAAAAATGGACTCTACATTAGGATGGCTTTGTTGAAGCTCTTACTTCTCGGTTGGTGA 1170 44.1 MSSSMFSMCASHGATLAHEQRTMFSDSMYNKSNFFNKHLLRFKTNRASSNLEHSSVSQKGRIQCRAIEVESNHTFLKGDKFQLHDVIEAQQFDRDILSAIFEVAREMETIEKKSRGSQLLNGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYTDIIVMRHFEGGAARRAAMTANIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYNDVKVYFVSPEVVKMKEDIKEYLTSKGVEWEESADLKEVASRCDVVYQTRIQRERFGERSDLYDEARGKYIVDREVLDVMQKHAVVMHPLPRLDEITVDVDGDPRAAYFRQAKNGLYIRMALLKLLLLGW 389
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00227 389 PRINTS Aspartate carbamoyltransferase signature 305 314 - -
Armi1g00227 389 PRINTS Aspartate carbamoyltransferase signature 213 230 - -
Armi1g00227 389 PRINTS Aspartate carbamoyltransferase signature 367 381 - -
Armi1g00227 389 PRINTS Aspartate carbamoyltransferase signature 159 168 - -
Armi1g00227 389 PRINTS Aspartate carbamoyltransferase signature 119 141 - -
Armi1g00227 389 PRINTS Aspartate carbamoyltransferase signature 345 350 - -
Armi1g00227 389 Pfam Aspartate-ornithine carbamoyltransferase, carbamoyl-P binding domain 85 226 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Armi1g00227 389 FunFam Aspartate carbamoyltransferase 2 218 373 - -
Armi1g00227 389 Gene3D Aspartate-ornithine carbamoyltransferase 86 382 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Armi1g00227 389 Pfam Aspartate-ornithine carbamoyltransferase, Asp-Orn binding domain 233 384 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Armi1g00227 389 NCBIfam aspartate carbamoyltransferase 85 386 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Armi1g00227 389 FunFam Aspartate carbamoyltransferase 85 217 - -
Armi1g00227 389 Hamap Aspartate carbamoyltransferase [pyrB]. 83 388 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Armi1g00227 389 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 79 386 - -
Armi1g00227 389 Gene3D Aspartate-ornithine carbamoyltransferase 214 373 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Armi1g00227 389 SUPERFAMILY Aspartate-ornithine carbamoyltransferase 81 386 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Armi1g00227 389 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 129 136 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Armi1g00227 389 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 351 374 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Armi1g00227 389 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 129 148 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Armi1g00227 389 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 214 225 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Armi1g00227 389 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 341 350 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00227 K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:4133216 Armi9g01863 Armi-Chr9:47248000 dispersed