AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00289 ATGCAACCCCAGAAAACCCTACCGGATTCCGACCTACCGTCGCTCGCTGCCATCAAAGTCAAATCATCCTCCCCTCGTTTCCGTTCCACCGCCAATCCTTCCGCCACCGAAACCCCCACCGCCGGTGCCCAACGCCGGATAGGCATCGCCGTCGATCTCAGTGATGAGAGCGCTTTTGCCGTCAAGTGGGCCGTCCATCAGTACCTCCGTCCCGGCGACGCCGTGATCCTCATCCACGTCCGTCCTACTTCCGTCCTCTACGGCGCCGATTGGGGCTCCGTTGACCTTTCAATCGTCGATACCGACAATGAGGAATCGCAACAGAAGCTTGAAGATGATTTCGATACTTTCACAACTACGAAATCGGCTGACCTAGCGCAGCCTCTGGTGGACGCGCATATACCGTATAAGATCCATATTGTTAAAGATCATGACATGAAGGAGAGGCTTTGTTTGGAGGTTGAGAGGTTAGGGTTAAGTGCTGTTATTATGGGAAGCCGAGGGTTTGGTGCTACAAAGCGAGGGAGTGATGGCCGGCTTGGGAGTGTTAGTGATTACTGTGTGCGTCACTGTGTGTGTCCGGTGGTTGTTGTGAGGTATCCTGATGAGAAGGATGCTGCTGCTTCTGTTGAGCCGGTGGTTTCGGTGGCTACTGCTGATGATGAAGAAGATGAAGCTGAATTTCATGATGCAACTGATGAGAGGAAATGTTAG 714 52.94 MQPQKTLPDSDLPSLAAIKVKSSSPRFRSTANPSATETPTAGAQRRIGIAVDLSDESAFAVKWAVHQYLRPGDAVILIHVRPTSVLYGADWGSVDLSIVDTDNEESQQKLEDDFDTFTTTKSADLAQPLVDAHIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGATKRGSDGRLGSVSDYCVRHCVCPVVVVRYPDEKDAAASVEPVVSVATADDEEDEAEFHDATDERKC 237
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00289 237 MobiDBLite consensus disorder prediction 23 41 - -
Armi1g00289 237 Pfam Universal stress protein family 45 199 IPR006016 -
Armi1g00289 237 MobiDBLite consensus disorder prediction 21 43 - -
Armi1g00289 237 CDD USP-Like 46 198 - -
Armi1g00289 237 PRINTS Universal stress protein signature 177 199 IPR006015 -
Armi1g00289 237 PRINTS Universal stress protein signature 44 62 IPR006015 -
Armi1g00289 237 Gene3D HUPs 34 211 IPR014729 -
Armi1g00289 237 PANTHER OS01G0783500 PROTEIN 7 236 IPR044162 -
Armi1g00289 237 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 45 202 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00289 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:5188902 Armi3g00443 Armi-Chr3:9559375 dispersed
Armi Armi-Chr13:1586278 Armi1g00289 Armi-Chr1:5188902 transposed
Armi Armi-Chr1:5188902 Armi15g01476 Armi-Chr15:73690765 wgd