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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00294 ATGCTTACCATTACTGTTTCTCCGGCGACTTCTTTTCAGTGTTGTTCTAGCAAAAATGGAGTTCTGTCAGCTACCAAATCGGTAATGCCTAAATCGGCCAGATCTCAATCGGCGGGAAGGAAAAAGGAGTCGATGAAGGTCACGTGCCAGGCATCAAGCATTCCCCACGCTGACGGTGTTCCGGAAATTGAGAGGAGGAAGCTCATGAACTTGTTGCTAATCGGCGCCGTTGGTCTTCCAACCGCCGGCATGTTGGCCCCTTACACAGCTTTCTTCGCTTCACCTAGTTCAGGTAGCTTCGGAGGCGGGATCGCTGCTAAGGATGAGCATGGAAATGATATTATCACATCACTATGGGTAAAAACTCATGGGCCTGGTGATAGAACCCTTACTCAAGGCTTAAAGGGAGACCCTACGTATCTTATGGTTGAGAACGACAGAACTCTCGCAACTTATGGAATCAATGCGGTCTGCACCCATTTGGGATGTATTGTGCCATGGAACACAGTAGAGAAGAAGTTTGTGTGCCCCTGCCATGGTTCTCAGTACAATAATGTTGGCGAAGTCGTTAGGGGTCCTGCTCATCTGTCGTTGGCTCTGGTTCATACGGATATAGACGACGATGAGAAAGTGGTGTTTGCTCCGTGGACTGAAACCGATTTCAGAACAGGCGATGCTCCATGGTGGTCGTAG 693 49.06 MLTITVSPATSFQCCSSKNGVLSATKSVMPKSARSQSAGRKKESMKVTCQASSIPHADGVPEIERRKLMNLLLIGAVGLPTAGMLAPYTAFFASPSSGSFGGGIAAKDEHGNDIITSLWVKTHGPGDRTLTQGLKGDPTYLMVENDRTLATYGINAVCTHLGCIVPWNTVEKKFVCPCHGSQYNNVGEVVRGPAHLSLALVHTDIDDDEKVVFAPWTETDFRTGDAPWWS 230
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00294 230 SUPERFAMILY ISP domain 58 229 IPR036922 GO:0051537(InterPro)
Armi1g00294 230 Pfam Rieske [2Fe-2S] domain 141 196 IPR017941 GO:0051537(InterPro)
Armi1g00294 230 PRINTS Rieske 2Fe-2S subunit signature 174 186 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Armi1g00294 230 PRINTS Rieske 2Fe-2S subunit signature 153 164 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Armi1g00294 230 PRINTS Rieske 2Fe-2S subunit signature 186 198 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Armi1g00294 230 Gene3D Single helix bin 49 94 - -
Armi1g00294 230 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 116 212 IPR017941 GO:0051537(InterPro)
Armi1g00294 230 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 38 218 IPR014349 GO:0005886(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Armi1g00294 230 FunFam Cytochrome b6-f complex iron-sulfur subunit 95 230 - -
Armi1g00294 230 Gene3D - 95 230 IPR036922 GO:0051537(InterPro)
Armi1g00294 230 CDD Rieske-cytochrome-b6f 104 230 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00294 K02636 cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:5246080 Armi8g02660 Armi-Chr8:96336044 wgd