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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00295 ATGCCTATATCCGATCACCGGCTTTCTCATTCAGCCGGAAAGCCCTGGTTACTATGTCCGTTTTGGCAATCTGGAACAGCTTCTTCCTCAACGCAGAATCTTCAATTTCAGAGTCGGAAAAGCCACGAAAACGGCGTTGCATCGAACGGTCGGTCTTCCAATAAGGTATCGTCGGTGGCGAAATCGCTCCTTCCGACTAGGCGAAGGCTCCGCCTTGATCCGGCTAACAACCTTTACTTTCCTTATGAGCCTGGTAAACAGGTGAAAAGTGCGGTTCGGATCAAGAACCATTGCAGTTCTCATGTTGCTTTTAAGTTTCAAACAACTGCGCCAAAGAGCTGTTATATGCGACCTCCTGGTGGTATTCTGGCTCCTGGGGAAAGCACTATTGCAACAGTTTTCAAGTTCGTTGAGCAACCAGAAAAAAACGAAAAACAGTTGGATAAAAGGAGCAAGGTTAAGTTCAAGATCATGAGCCTCAAGGTCAAAGAAGGAATCGACTATGTGCCTGAATTGTTCGAGGAGCAAAAGGATGAAGTAGTAGTTGAGAGAATATTACGTGTTATTTTCTTGAATGCGGAACGCCCTACCCCTGCATTGGAAAAACTAAAGCATCAACTGGCTGAAGCTGAGGCTGAATTAGAATTACACAAAAAACCTCAAGTGGATACAAGTCCAAAAGTTGTTGGCCAAGGACTTATTATAGATGAATGGAAAGAACGAAGGGAGAAATACCTTGCTCGACAAAAGGTTGAGGCTGTAGATTTGGTGTGA 774 44.57 MPISDHRLSHSAGKPWLLCPFWQSGTASSSTQNLQFQSRKSHENGVASNGRSSNKVSSVAKSLLPTRRRLRLDPANNLYFPYEPGKQVKSAVRIKNHCSSHVAFKFQTTAPKSCYMRPPGGILAPGESTIATVFKFVEQPEKNEKQLDKRSKVKFKIMSLKVKEGIDYVPELFEEQKDEVVVERILRVIFLNAERPTPALEKLKHQLAEAEAELELHKKPQVDTSPKVVGQGLIIDEWKERREKYLARQKVEAVDLV 257
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00295 257 MobiDBLite consensus disorder prediction 32 60 - -
Armi1g00295 257 Gene3D Immunoglobulins 65 194 IPR013783 -
Armi1g00295 257 Pfam MSP (Major sperm protein) domain 70 178 IPR000535 -
Armi1g00295 257 SUPERFAMILY PapD-like 58 201 IPR008962 -
Armi1g00295 257 Coils Coil 200 220 - -
Armi1g00295 257 ProSiteProfiles Major sperm protein (MSP) domain profile. 69 191 IPR000535 -
Armi1g00295 257 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 69 247 IPR016763 GO:0005789(PANTHER)|GO:0005789(InterPro)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00295 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr11:20671649 Armi1g00295 Armi-Chr1:5263956 dispersed
Armi Armi-Chr1:5263956 Armi9g02377 Armi-Chr9:83376425 dispersed
Armi Armi-Chr1:5263956 Armi15g01459 Armi-Chr15:73363533 wgd