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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00304 ATGGCTAGCACGCATGAACTCTCAGATGCATACACTGAAACCACTGATGAAAACGACGAACATGATGAAGAAGAGTACACGGGTCATATCAACGACACGTGCGGTCCACGTGGGAGAGTTGGTCCGAACCCTAGATTCCCATGGGTTCAAGAATGGAACCAGGTCTTGTTGCTGGTGTGCGCCATGGGTCTGTTCGTGGACCCGTTCTTCTTCTACGCACTCTCCATAAGCGAGCCGTGCATGTGTGTGTTCATCGACGGGTGGTTTGCCGTCACTGTGACGGTGATCCGCAGCATGACGGATGCATCCCATGTGTGGTTGCGGTTTAAGATGAGGAGGAGGTGGCGGTGGAAACCAACCCCACCACGTCGATTGAGGCGGCGTTATGGAACCGGTGTACGGAGCGTGGTGGCGTGGCTCGTGACGGAGGCTAAGAACCGATTCTTATTTGATCTCTTCGTCATCCTACCTATACCCCAGGTTCCATTTTCGCAATTTAAACTTTAA 507 52.47 MASTHELSDAYTETTDENDEHDEEEYTGHINDTCGPRGRVGPNPRFPWVQEWNQVLLLVCAMGLFVDPFFFYALSISEPCMCVFIDGWFAVTVTVIRSMTDASHVWLRFKMRRRWRWKPTPPRRLRRRYGTGVRSVVAWLVTEAKNRFLFDLFVILPIPQVPFSQFKL 168
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00304 168 MobiDBLite consensus disorder prediction 1 38 - -
Armi1g00304 168 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 43 161 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00304 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
20190 Armi1g00304 Armi8g02639
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:5392849 Armi8g02640 Armi-Chr8:95944012 dispersed
Armi Armi-Chr1:5392849 Armi8g02639 Armi-Chr8:95889730 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Armi1g00270 . 52 357 Ion Channels gene family AT5G55630 61.111 4.62e-135 387.0
Armi1g00302 ACH 273 692 Ion Channels gene family AT5G54250 82.506 0.0 730.0
Armi1g00304 ACH 56 202 Ion Channels gene family AT5G54250 48.322 1.42e-34 125.0
Armi1g00833 . 5 900 Ion Channels gene family AT2G32400 52.935 0.0 996.0
Armi1g00836 . 56 932 Ion Channels gene family AT1G05200 65.498 0.0 1226.0
Armi1g01663 ACH 52 726 Ion Channels gene family AT5G15410 68.076 0.0 915.0
Armi1g01798 ACH 11 779 Ion Channels gene family AT5G49890 76.593 0.0 1173.0
Armi1g02872 . 46 819 Ion Channels gene family AT3G07520 37.421 1.87e-167 506.0
Armi1g02876 . 84 563 Ion Channels gene family AT5G11210 36.289 4.04e-96 306.0
Armi1g02880 . 42 816 Ion Channels gene family AT5G48410 38.113 3.14e-172 518.0
Armi1g02928 . 547 676 Ion Channels gene family AT2G28260 59.06 3.15e-48 163.0
Armi1g03108 . 7 857 Ion Channels gene family AT2G26650 66.175 0.0 1199.0
Armi1g03281 . 7 765 Ion Channels gene family AT5G33280 73.386 0.0 1132.0
Armi1g03324 ACH 505 713 Ion Channels gene family AT5G37500 29.439 1.97e-12 68.6
Armi1g03467 ACH 1 717 Ion Channels gene family AT5G57940 76.616 0.0 1130.0
Armi1g03602 . 1 719 Ion Channels gene family AT4G30360 68.399 0.0 1008.0
Armi2g00028 . 17 879 Ion Channels gene family AT2G29120 43.341 0.0 707.0
Armi2g00464 . 560 741 Ion Channels gene family AT3G07520 40.323 7.61e-42 147.0
Armi3g00814 . 17 434 Ion Channels gene family AT4G18160 60.52 1.36e-172 488.0
Armi3g00978 ACH 83 715 Ion Channels gene family AT5G53130 58.281 0.0 765.0
Armi3g02157 . 6 716 Ion Channels gene family AT5G37500 55.245 0.0 796.0
Armi3g04650 . 543 685 Ion Channels gene family AT5G37500 27.273 1.07e-07 53.5
Armi4g00047 . 12 912 Ion Channels gene family AT1G42540 64.595 0.0 1241.0
Armi4g00735 . 6 745 Ion Channels gene family AT3G17700 60.985 0.0 884.0
Armi4g00744 . 5 745 Ion Channels gene family AT3G17700 59.073 0.0 852.0
Armi4g00746 . 6 745 Ion Channels gene family AT3G17700 59.574 0.0 862.0
Armi4g01536 . 17 70 Ion Channels gene family AT3G51480 48.148 2.61e-09 52.4
Armi4g02175 ACH 20 824 Ion Channels gene family AT3G02850 67.118 0.0 1162.0
Armi4g02414 ACH 3 888 Ion Channels gene family AT3G51480 59.798 0.0 1125.0
Armi4g03139 ACH 2 778 Ion Channels gene family AT3G27170 70.281 0.0 1142.0
Armi4g03299 . 1 678 Ion Channels gene family AT2G28260 70.555 0.0 1018.0
Armi4g03430 ACH 450 727 Ion Channels gene family AT4G32500 29.139 1.15e-20 94.4
Armi4g03539 . 30 637 Ion Channels gene family AT2G28260 54.844 0.0 726.0
Armi4g04605 . 1 716 Ion Channels gene family AT5G53130 76.381 0.0 1125.0
Armi5g00891 . 30 662 Ion Channels gene family AT4G32650 57.547 0.0 728.0
Armi5g01618 . 17 351 Ion Channels gene family AT4G18160 54.839 1.59e-124 363.0
Armi5g02798 . 3 856 Ion Channels gene family AT2G26650 58.057 0.0 1031.0
Armi6g00391 . 1 678 Ion Channels gene family AT2G28260 70.798 0.0 1009.0
Armi6g00689 . 543 727 Ion Channels gene family AT4G32500 29.858 1.91e-16 80.9
Armi6g00788 . 7 634 Ion Channels gene family AT2G28260 57.643 0.0 762.0
Armi6g00866 . 548 726 Ion Channels gene family AT2G25600 33.889 4.95e-16 74.3
Armi6g01774 . 30 661 Ion Channels gene family AT4G32650 60.032 0.0 764.0
Armi7g00025 . 10 878 Ion Channels gene family AT2G29120 45.547 0.0 793.0
Armi7g00249 . 41 841 Ion Channels gene family AT2G29120 32.552 7.60e-139 434.0
Armi7g00250 . 21 822 Ion Channels gene family AT2G24720 29.805 2.95e-102 336.0
Armi7g00251 . 27 881 Ion Channels gene family AT2G29110 29.587 3.44e-105 345.0
Armi7g00300 . 61 932 Ion Channels gene family AT1G05200 66.059 0.0 1231.0
Armi7g01026 . 6 795 Ion Channels gene family AT4G22200 65.348 0.0 1073.0
Armi7g01820 ACH 155 396 Ion Channels gene family AT5G57940 74.38 1.43e-126 374.0
Armi7g01821 ACH 455 730 Ion Channels gene family AT4G30560 80.866 5.76e-158 455.0
Armi7g02149 . 7 856 Ion Channels gene family AT2G26650 66.628 0.0 1200.0
Armi8g00299 ACH 504 713 Ion Channels gene family AT5G37500 29.907 1.22e-13 72.4
Armi8g00420 ACH 1 717 Ion Channels gene family AT5G57940 76.471 0.0 1132.0
Armi8g00544 . 384 772 Ion Channels gene family AT5G11210 32.737 1.80e-60 210.0
Armi8g00545 . 441 833 Ion Channels gene family AT2G29110 33.416 1.01e-58 206.0
Armi8g00552 . 379 772 Ion Channels gene family AT5G11210 32.663 8.65e-61 211.0
Armi8g00553 . 492 873 Ion Channels gene family AT2G17260 34.848 3.84e-61 214.0
Armi8g01001 . 1 791 Ion Channels gene family AT5G26240 81.83 0.0 1241.0
Armi8g01356 ACH 9 779 Ion Channels gene family AT5G49890 76.265 0.0 1179.0
Armi8g01551 ACH 15 726 Ion Channels gene family AT5G15410 70.856 0.0 983.0
Armi8g02639 ACH 77 692 Ion Channels gene family AT5G54250 76.688 0.0 993.0
Armi8g02640 ACH 87 692 Ion Channels gene family AT5G54250 72.982 0.0 920.0
Armi8g02815 ACH 58 357 Ion Channels gene family AT5G55630 51.667 7.55e-108 318.0
Armi8g02816 ACH 51 357 Ion Channels gene family AT5G55630 51.792 1.35e-108 320.0
Armi8g02903 . 90 344 Ion Channels gene family AT5G40890 24.528 8.03e-07 50.8
Armi9g01770 . 19 432 Ion Channels gene family AT4G18160 62.143 1.24e-175 496.0
Armi9g02636 ACH 57 358 Ion Channels gene family AT5G55630 51.987 3.35e-117 340.0
Armi10g00925 . 1 725 Ion Channels gene family AT2G24610 66.984 0.0 1013.0
Armi10g02175 ACH 1 716 Ion Channels gene family AT5G53130 64.601 0.0 952.0
Armi11g00019 ACH 30 900 Ion Channels gene family AT4G35290 55.67 0.0 976.0
Armi11g01158 . 1 730 Ion Channels gene family AT4G03560 66.667 0.0 1021.0
Armi11g01469 ACH 30 901 Ion Channels gene family AT4G35290 63.001 0.0 1148.0
Armi12g00243 . 35 748 Ion Channels gene family AT1G19780 66.713 0.0 948.0
Armi12g00430 . 36 700 Ion Channels gene family AT5G14870 62.219 0.0 866.0
Armi13g00013 ACH 2 778 Ion Channels gene family AT3G27170 75.607 0.0 1203.0
Armi13g00135 . 21 699 Ion Channels gene family AT5G14870 68.459 0.0 978.0
Armi13g01833 ACH 3 900 Ion Channels gene family AT3G51480 59.406 0.0 1133.0
Armi14g00934 . 78 362 Ion Channels gene family AT5G55630 39.519 1.65e-53 186.0
Armi14g01606 . 120 362 Ion Channels gene family AT5G55630 37.551 2.50e-44 150.0
Armi14g01607 ACH 61 358 Ion Channels gene family AT5G55630 55.034 7.13e-118 344.0
Armi14g01608 ACH 72 352 Ion Channels gene family AT5G55630 43.06 5.00e-74 231.0
Armi15g01153 . 25 677 Ion Channels gene family AT5G46240 55.941 0.0 800.0
Armi15g01308 . 12 848 Ion Channels gene family AT2G29120 34.994 1.85e-151 469.0
Armi15g01653 ACH 62 352 Ion Channels gene family AT5G55630 55.326 1.63e-119 346.0
Armi16g01389 ACH 41 814 Ion Channels gene family AT5G48410 42.365 0.0 610.0
Armi16g01398 . 18 819 Ion Channels gene family AT3G07520 38.295 0.0 597.0
Armi16g01863 . 57 405 Ion Channels gene family AT4G01840 57.923 2.18e-140 404.0
Armi17g00215 . 537 916 Ion Channels gene family AT2G29120 46.287 1.02e-113 352.0
Armi17g01315 ACH 77 816 Ion Channels gene family AT5G48410 36.939 5.15e-159 481.0
Armi18g00057 . 539 702 Ion Channels gene family AT5G37500 31.073 1.12e-08 57.0
Armi18g00992 ACH 16 827 Ion Channels gene family AT3G02850 69.804 0.0 1212.0