AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00306 ATGGGATCATCTCTCAAACTCGCCGTACTTTCCGCCACTGTCTTATCCACCGCCGTCATGTTCAACCTTTTAACACCAATCATTATGAATCTTTCACTCACGGAGGTCCGTGCCATATGGTCCTCACTCATATCATGGCTCAAACCACCTTATCTTTACGTCGTCATCAATTGCATAATCATCACCATCGTTGCTTCCTCACGGTTACAATCCAAGGTCGCCGATAATTCTGACCATCCAACGCCGTCAACTTTTCCGTTACCGCCATTTGAGCATGCAACTGCCAAGGTCGTTGTTCTTCCCGTTGAAGAAGTACCGCAGTTTCTTCAACATGAAGTAAGGGAAGTAGTGGTGCCGCCGTTTGACGGAGTTATGTTGGGGGATGAACGGCCGGTGGCGGTGAAGGAGGGAGTCGCCGGTGATCGGAAGTTTGTTCAGGTTCCGGAACGTGGTGATTTTAGGGATGAGGATGTGAAGATTGCGACGGAAGCTTATGAAGAGATTACGAAGAATATGGTGAATAAATCTGTTGTCTCGACGGCTTCTTGGAAACCTTTGAAGATAAGTGAAGTGGGTCTTTCTTTTCCGGTGGAGAAACCACCGGTTTCTGCTAGATTCAGTCACCGGAAATCTACTAAAGTCAGCCCTGAAGGTGGAAGAACATTGGGAGTCACGAAGCCAAAGCGGCAAGACACTCTGGAAACCACGTGGAAGACAATAACCGAAGGTCGGTCAGTTCCGTTAACGAGGCACCTCCGTAAATCCGACACGTGGGAGACCCACTGTCAAAGCCGTCAAAACCACAACTCCGATGATCATCCTCCCGACAGGATGACAAAATCCGACACATTCGACGAAGTTAGCAGCAGCCGGAAACCACCACCTCCGCCGTCAAAACTCAGCCGGTCCGGCGGCTCAGGGAGGCTGAAAAAGGAACCGTCGTTGGGTCAAGAGGAGTTGAACCGGCGCGTAGAAGCATTCATAAAGAAATTCAACGAGGATATGAGATTGCAGAGACAAGAATCTTTGAATCAGTACATGGAGATGATTAATCGTGGGGCCCATTAG 1068 49.16 MGSSLKLAVLSATVLSTAVMFNLLTPIIMNLSLTEVRAIWSSLISWLKPPYLYVVINCIIITIVASSRLQSKVADNSDHPTPSTFPLPPFEHATAKVVVLPVEEVPQFLQHEVREVVVPPFDGVMLGDERPVAVKEGVAGDRKFVQVPERGDFRDEDVKIATEAYEEITKNMVNKSVVSTASWKPLKISEVGLSFPVEKPPVSARFSHRKSTKVSPEGGRTLGVTKPKRQDTLETTWKTITEGRSVPLTRHLRKSDTWETHCQSRQNHNSDDHPPDRMTKSDTFDEVSSSRKPPPPPSKLSRSGGSGRLKKEPSLGQEELNRRVEAFIKKFNEDMRLQRQESLNQYMEMINRGAH 355
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00306 355 PANTHER COTTON FIBER (DUF761) 24 353 - -
Armi1g00306 355 MobiDBLite consensus disorder prediction 228 243 - -
Armi1g00306 355 Pfam Domain of unknown function (DUF4408) 39 69 IPR025520 -
Armi1g00306 355 MobiDBLite consensus disorder prediction 247 287 - -
Armi1g00306 355 MobiDBLite consensus disorder prediction 203 318 - -
Armi1g00306 355 Pfam Cotton fibre expressed protein 317 352 IPR008480 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00306 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr11:19561923 Armi1g00306 Armi-Chr1:5429903 dispersed
Armi Armi-Chr1:5429903 Armi9g02312 Armi-Chr9:79074245 dispersed
Armi Armi-Chr1:5429903 Armi15g01451 Armi-Chr15:73109062 wgd