AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00379 ATGGAAGAATCAAAAGTTCATGTTTTCAAATCATCGTCAGAGTTGCTTGAGAAGTTGCATGAGAAGTGGAATTCAGTCGAGAGGCTGCCGTATCCAGCTATGTATTCGAGTGTTTATGGTGGAATTGTGCTTGATCCAGCAATGATGGTGATCCCCATTGATGATCATATGGTTCATAGAGGACATGGTGTATTTGATACTGCCATCATTCTTGATGGATACCTCTATGAATTGGATGGTCATCTTGATCGATTCCTTATATCCGCATCAAGAGCAAAGATCACGTCTCCATTCCCAAAATCGACTCTTTCCGCCATTCTTATCCAGCTAACCGCAGCATCGAACTGCAAGAAAGGAACTTTAAGATATTGGTTAAGTGCAGGGCCAGGCGATTTCTTACTTTCTCCTTCAGGTTGCCCGACTTCCGCTTTCTATGCGATTGTTATAGACGAAGAGTTCTCCCAGTGTAAAGAAGGTGTGAAAGTGATAACTTCCACGATCCCCATGAAAGTACCTCTATTTGCCACTAGCAAAAACGTCAATTACCTCCCAAATGTCCTCTCGAAACTGGAAGCCGAAGAGAAAGGCGCGTTTGCGTCCATTTGGGTGGACGAAGAAGGGTATGTGGGCGAGGGTCCAAACGTGAATGTGGGTTTCGTGACCCATGAGAATGAGCTCATCCTGCCTTTCTTTGACAAGATTCTAAGTGGGTGCACTGCGAAACGGCTTCTTGAGCTAGCTCCGAAATTGGTTGAAAACGGGCGTTTGAAGAGCGTGAAAACCGCAAACATAACGGTCGAGGAAGCCAAAGGAGCGGCTGAGATGATGTACATCGGAAGCACGCTTCCTGTACTACCGATCATCGAATGGGATGGAAAGGCTATCGGCGATGGGAAGGTCGGGGACTTGACGATGGCGCTATCGGACCTGGTTTGGGAAGATATGGTGGCTGGTCCTGAGACACACAGGTTAAAAGTTCCTTATGTGTAA 990 46.46 MEESKVHVFKSSSELLEKLHEKWNSVERLPYPAMYSSVYGGIVLDPAMMVIPIDDHMVHRGHGVFDTAIILDGYLYELDGHLDRFLISASRAKITSPFPKSTLSAILIQLTAASNCKKGTLRYWLSAGPGDFLLSPSGCPTSAFYAIVIDEEFSQCKEGVKVITSTIPMKVPLFATSKNVNYLPNVLSKLEAEEKGAFASIWVDEEGYVGEGPNVNVGFVTHENELILPFFDKILSGCTAKRLLELAPKLVENGRLKSVKTANITVEEAKGAAEMMYIGSTLPVLPIIEWDGKAIGDGKVGDLTMALSDLVWEDMVAGPETHRLKVPYV 329
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00379 329 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 39 316 IPR036038 GO:0003824(InterPro)
Armi1g00379 329 Gene3D - 12 150 IPR043131 -
Armi1g00379 329 FunFam D-amino-acid transaminase, chloroplastic 11 149 - -
Armi1g00379 329 FunFam D-alanine aminotransferase 151 318 - -
Armi1g00379 329 PANTHER AMINO-ACID AMINOTRANSFERASE 24 319 IPR050571 GO:0019752(PANTHER)
Armi1g00379 329 Gene3D - 151 319 IPR043132 -
Armi1g00379 329 Pfam Amino-transferase class IV 63 290 IPR001544 GO:0003824(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00379 K18482 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:6921402 Armi5g02619 Armi-Chr5:89565260 dispersed