AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00392 ATGGGCGAAAATTATCAGTACCAACTCCACCAGCACCAAGAAATCCACCAGCAACAACAAGAACAGAAAGCAACAAGGCCGTCAAGATTAGGGTTACGAAACTCCGGCGGCGGCGGTGGTGGTGGAGAGATTGTGGAAGTTCAGGGCGGTCACATTGTACGGTCCACCGGCCGGAAAGATCGACACAGTAAAGTTTGTACGGCGAAAGGGCCGAGAGACCGGCGCGTTCGGCTCTCGGCTCACACCGCCATCCAATTCTACGACGTACAAGATCGGCTCGGCTACGACCGGCCGAGCAAAGCCGTCGATTGGCTTATCAAGAAAGCGAAAACCGCCATCGACGAGCTCGCCGAGCTTCCGGCGTGGAAACCCACCGGCGCCGTGAACCCGAATTCGGCTACAATTATGAGTTTTGAGCAAAACCCTAATGGGGAAAACGTAAATCATCATTTGGAGGAACACCCAGATGAGGATATTGTTGATAATCAAATTGGTAACGCTCAAAATTCAAACTTTTTGGCTCAATCTCTTGATAATACAATCAAGTCTTTTTTTCCGATGGGTGGTGGTGGTTCATCAACGCCGCCGCCGGAAAATATTAATTCTTCAGCTATGCAATTTCATCACAGCTTTCCACCATCGGAGTTACTTTCAAGACCCATTAATCAGAATCAAGATTTAAAGCTTTCTCTTCAATCATTTCAAGATCCGATTTTTCACCACCGTCAACCACCGCACCACCACCACCACCACCACCAAGGTGATAATAATAATAATAATAACAGCATGTTTTTCGACGGCTCCGGTTGGCCGGAGAATCAGTCTGGTGGGTTCCAACGGTTGGTGGCTTGGGGCGGTGGCGGTGGAGACGGTGGAAACACTGGATTTGTGTTCGGTTCGCCGCCGGTGGCGGCGACGGCACAGACGCCGGTGTTTCTTCAGCCGTTGTTCAGCCAAACAACGAACAATCAGTTGTTTAATTACATTTCTCAGAGGGGACCCCTTCAGTCCAGCAACACATCACCTCCGGTTCGTGCGTGGATCGACCCATTGGTGTCGTTTTCCGGCTCGGCGGCGATCGATCAACATCAAACGTTAGCTTTTCATCACCCGTCTTCCATGCCCGTGTTTAATTCCGGCATGTTTCCCGGGTTCCATATTCCGGCACGAATCCAAGGTGAAGAACAACAGGAACACGATGGCATCTCCGATAAGCCGTCGTCTGCTTCCTCCGATTCTCGAGATTGA 1248 50.56 MGENYQYQLHQHQEIHQQQQEQKATRPSRLGLRNSGGGGGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAELPAWKPTGAVNPNSATIMSFEQNPNGENVNHHLEEHPDEDIVDNQIGNAQNSNFLAQSLDNTIKSFFPMGGGGSSTPPPENINSSAMQFHHSFPPSELLSRPINQNQDLKLSLQSFQDPIFHHRQPPHHHHHHHQGDNNNNNNSMFFDGSGWPENQSGGFQRLVAWGGGGGDGGNTGFVFGSPPVAATAQTPVFLQPLFSQTTNNQLFNYISQRGPLQSSNTSPPVRAWIDPLVSFSGSAAIDQHQTLAFHHPSSMPVFNSGMFPGFHIPARIQGEEQQEHDGISDKPSSASSDSRD 415
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00392 415 MobiDBLite consensus disorder prediction 256 270 - -
Armi1g00392 415 Pfam TCP family transcription factor 57 156 IPR017887 -
Armi1g00392 415 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 345 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Armi1g00392 415 MobiDBLite consensus disorder prediction 1 45 - -
Armi1g00392 415 MobiDBLite consensus disorder prediction 1 29 - -
Armi1g00392 415 ProSiteProfiles TCP domain profile. 58 116 IPR017887 -
Armi1g00392 415 MobiDBLite consensus disorder prediction 392 415 - -
Armi1g00392 415 MobiDBLite consensus disorder prediction 239 270 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00392 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
20215 Armi1g00392 Armi7g00259
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr15:69422901 Armi1g00392 Armi-Chr1:7171774 dispersed
Armi Armi-Chr18:6579034 Armi1g00392 Armi-Chr1:7171774 dispersed
Armi Armi-Chr1:7171774 Armi3g00794 Armi-Chr3:18891538 dispersed
Armi Armi-Chr1:7171774 Armi7g00259 Armi-Chr7:4428138 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Armi1g00392 ACH 12 419 TCP Transcription Factor family AT3G15030 46.62 2.28e-87 270.0
Armi2g00930 ACH 37 484 TCP Transcription Factor family AT3G47620 41.791 6.37e-68 221.0
Armi2g01066 ACH 47 330 TCP Transcription Factor family AT5G60970 38.411 2.03e-46 159.0
Armi2g01152 ACH 143 301 TCP Transcription Factor family AT3G18550 40.606 3.98e-25 104.0
Armi2g03338 ACH 52 279 TCP Transcription Factor family AT5G51910 51.838 7.55e-70 218.0
Armi3g00513 . 79 256 TCP Transcription Factor family AT1G67260 38.333 3.13e-28 112.0
Armi3g00794 . 22 365 TCP Transcription Factor family AT4G18390 40.811 7.37e-60 199.0
Armi3g02707 ACH 51 279 TCP Transcription Factor family AT5G51910 50.201 1.71e-64 202.0
Armi3g03999 . 104 172 TCP Transcription Factor family AT1G68800 71.014 3.36e-26 106.0
Armi3g04418 ACH 9 312 TCP Transcription Factor family AT1G69690 44.615 1.94e-56 184.0
Armi4g03163 . 1 312 TCP Transcription Factor family AT3G27010 48.169 2.04e-77 238.0
Armi4g04473 ACH 51 279 TCP Transcription Factor family AT5G51910 49.819 7.55e-71 220.0
Armi5g01272 . 34 248 TCP Transcription Factor family AT5G23280 61.017 6.46e-85 252.0
Armi5g01933 ACH 57 143 TCP Transcription Factor family AT1G58100 83.908 4.51e-47 161.0
Armi6g00398 . 18 97 TCP Transcription Factor family AT5G23280 53.75 2.69e-26 98.6
Armi7g00259 ACH 5 420 TCP Transcription Factor family AT3G15030 49.099 1.14e-99 302.0
Armi7g01126 . 26 400 TCP Transcription Factor family AT1G58100 48.837 2.97e-92 285.0
Armi9g00357 . 38 118 TCP Transcription Factor family AT1G69690 52.941 8.54e-26 97.8
Armi12g00847 ACH 144 301 TCP Transcription Factor family AT3G18550 44.512 2.30e-27 110.0
Armi12g01025 ACH 37 413 TCP Transcription Factor family AT3G47620 46.41 3.73e-66 216.0
Armi13g00304 ACH 57 184 TCP Transcription Factor family AT3G02150 63.281 3.23e-48 162.0
Armi13g00399 . 85 234 TCP Transcription Factor family AT1G67260 38.217 1.70e-20 88.6
Armi13g00402 . 83 321 TCP Transcription Factor family AT1G67260 34.766 6.10e-26 103.0
Armi14g01060 ACH 87 235 TCP Transcription Factor family AT1G67260 39.375 1.61e-25 104.0
Armi14g01120 ACH 47 134 TCP Transcription Factor family AT5G60970 77.528 3.94e-42 146.0
Armi14g01196 ACH 102 489 TCP Transcription Factor family AT3G47620 42.019 6.09e-63 209.0
Armi15g00250 . 57 227 TCP Transcription Factor family AT2G45680 60.452 3.32e-58 188.0
Armi15g01117 . 22 365 TCP Transcription Factor family AT4G18390 41.538 1.01e-55 186.0
Armi15g01303 . 13 90 TCP Transcription Factor family AT2G31070 80.769 5.45e-39 136.0
Armi18g00226 ACH 21 204 TCP Transcription Factor family AT3G02150 50.777 2.80e-47 160.0
Armi18g00276 . 75 234 TCP Transcription Factor family AT1G67260 43.353 2.29e-27 108.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Armi TCP 9.3e-33 CL0123 TF TCP