AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00395 ATGGCTTCAGGGATATTAGATGCGGATAAGATAAGCAAAGGGAGGAGTAAGTGGGGAGAAGGTAATAAAGTCTACACACGAAGGTTTAAAAAGGCCAACAAGAACACCGCCACCGCCCCCGTCACCGCTTCTTCCCCAACCACCACCGTCACCACCACTTCTCTTCCCGCCACCGCTAACCCAGCTTCTCCACCCGCCACCACAAACAACGAGCAAACCCTAGCCACTGAGGACGCAAATTCGGAAAGGCAACAGACTTTATCGCCGGTACTCGAGGCATCGGTATCGGTATCAGATGATCATTCCATTCAAAATCGGCAGCTTGAAGTGGTTGCGGTTTCGCCGAACCGGCCCACCGGAAACGGGGTGATAAAACCGGTTGTGGTTTTGGTGGATGGTCGGGTCAAGATTAATTTGAAAGCTGCGAGGTCTAAGGATGAGATTGTTGATCTTAGGGAGAAGCTAAGAGCTGAGCTTGATCGAGTCCGGCGTTTAGCTCAAAAGCTTGAAGATAAAGAAGCTGAGCTGACTGCATTTTCGACAGTTGTTGGTGTTGCTGGCGACGGTGAGGCTTACAGTCATTCACAGTATTCAGGTAATGATATAGTGGAGAGGAGAGCTCTACTTAGAGTGAATTCAGAAATGGGTACTGATTTCATGGACAGGAGAGCTTTAGCAAGAGTTGAACGCGAAATCGGTTCTGATGTGATTGACCGTAGAGCCTTGATGAGATTAAATTCTGAAGTTGGTTCAGTGGCAAATAGTGATATAAGGCCTTTTAGGCCATTAAGTGTATCAGTCGTTGATAACAATCATGGGGTTGGTGAATTTGTTGAGAAAGAGAAGAGGACACCAAAGGCGAATCAGTATTATCGGAATTCAGATTTTCTACTTGGGAAGGACAGATTACCTCCTGAGAGCAACAAGAGGCATAAAGTTAACGGTGGAAGAAAGCATAGCAAGGAATCGGATTACAGTATTGGTCATGAACGGCACAGGAGTCAAATGTTCAAGAGTTGCAACAATTTGCTGCAGAGATTGATGAAGCACAAGCATGGTTGGGTGTTTAATGAACCTGTTAATGCGAAACTGCTTGGGCTGCACGATTACCATGACATCATTAAACACCCAATGGATTTGGGCACGATTAAGAGTCGTCTTGCCCAAAACTTCTACAAGTCCCCCAGAGAGTTTGCGGATGATGTCAGACTCACATTTCATAATGCCATGACTTATAATCCAAAAGGGCAAGATGTACATGTTATGGCGGAGCAGTTATCAAATATTTTTGAAGAGAGGTGGCCAGTGATTGAATCTGAATACAATCCAGACTGGAGATATGGAATGATTTATGATGCAAGCACTCCAACTCCCACTTCAAGAAAGGTTCCTCATTTCGCACATGCCCCTCCAAGGACGCTGTATAGGTCAGAGTCCATGACCTTGCCTTTTATGACTAGGCAAAAACCCTCTAAATTTGCCCCACCTAGCAGGACACCCATGCCAAAGAAACCTAAAGCCAAGGATCCCAATAAGAGGAATATGACTTATGAAGAGAAGCAAAAACTTAGCACAAACCTTCAAAGCCTACCTTCTGAAAAGCTCGACAACATTGTCCAGATCATCAAAAAGAAGAACACCTCACTTTCTCAACATGACGATGAAATCGAAGTTGATATTGATAGTGTTGATATAGAAACTCTCTGGGAACTCGACAGGTTTGTCACAAATTACAAGAAGAGTTTAAGCAAGCATAAGAGGAAAGCTGAACTTGCTCAACAAGCAAGGGTGGGAGCTGGCAATGCTAATCAGGCTGTGTTAGAAAACCTGGCAACATCCATTCCACATGCCCCAAAAGAAAATAAAACAAATGAGAAGACTCTTGCTAGTACTCCTCCCGACCAGGGAGAGAGGAGAGGAGATAATGCCAGTAGGTCTAGTAGTTCAAGCAGTTCTAGCAGTGACTCTGGATCCTCTTCAAGCGATTCAGATAGTGATAGTTCCTCTGAAGATGGATCGGATGCAGGTCATTCACCTAGAAGTTGA 2046 44.87 MASGILDADKISKGRSKWGEGNKVYTRRFKKANKNTATAPVTASSPTTTVTTTSLPATANPASPPATTNNEQTLATEDANSERQQTLSPVLEASVSVSDDHSIQNRQLEVVAVSPNRPTGNGVIKPVVVLVDGRVKINLKAARSKDEIVDLREKLRAELDRVRRLAQKLEDKEAELTAFSTVVGVAGDGEAYSHSQYSGNDIVERRALLRVNSEMGTDFMDRRALARVEREIGSDVIDRRALMRLNSEVGSVANSDIRPFRPLSVSVVDNNHGVGEFVEKEKRTPKANQYYRNSDFLLGKDRLPPESNKRHKVNGGRKHSKESDYSIGHERHRSQMFKSCNNLLQRLMKHKHGWVFNEPVNAKLLGLHDYHDIIKHPMDLGTIKSRLAQNFYKSPREFADDVRLTFHNAMTYNPKGQDVHVMAEQLSNIFEERWPVIESEYNPDWRYGMIYDASTPTPTSRKVPHFAHAPPRTLYRSESMTLPFMTRQKPSKFAPPSRTPMPKKPKAKDPNKRNMTYEEKQKLSTNLQSLPSEKLDNIVQIIKKKNTSLSQHDDEIEVDIDSVDIETLWELDRFVTNYKKSLSKHKRKAELAQQARVGAGNANQAVLENLATSIPHAPKENKTNEKTLASTPPDQGERRGDNASRSSSSSSSSSDSGSSSSDSDSDSSSEDGSDAGHSPRS 681
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00395 681 Coils Coil 141 175 - -
Armi1g00395 681 Pfam Bromodomain extra-terminal - transcription regulation 515 576 IPR027353 -
Armi1g00395 681 ProSiteProfiles Bromodomain profile. 348 420 IPR001487 GO:0005515(InterPro)
Armi1g00395 681 MobiDBLite consensus disorder prediction 300 331 - -
Armi1g00395 681 Gene3D - 508 588 IPR038336 -
Armi1g00395 681 MobiDBLite consensus disorder prediction 302 331 - -
Armi1g00395 681 SMART bromo-6 329 439 IPR001487 GO:0005515(InterPro)
Armi1g00395 681 PRINTS Bromodomain signature 401 420 IPR001487 GO:0005515(InterPro)
Armi1g00395 681 PRINTS Bromodomain signature 351 364 IPR001487 GO:0005515(InterPro)
Armi1g00395 681 PRINTS Bromodomain signature 383 401 IPR001487 GO:0005515(InterPro)
Armi1g00395 681 PRINTS Bromodomain signature 367 383 IPR001487 GO:0005515(InterPro)
Armi1g00395 681 MobiDBLite consensus disorder prediction 31 87 - -
Armi1g00395 681 ProSiteProfiles NET domain profile. 505 586 IPR027353 -
Armi1g00395 681 MobiDBLite consensus disorder prediction 614 681 - -
Armi1g00395 681 PANTHER OSJNBA0053K19.4 PROTEIN 23 673 - -
Armi1g00395 681 MobiDBLite consensus disorder prediction 1 87 - -
Armi1g00395 681 Pfam Bromodomain 340 424 IPR001487 GO:0005515(InterPro)
Armi1g00395 681 CDD Bromo-plant1 336 434 IPR037377 -
Armi1g00395 681 MobiDBLite consensus disorder prediction 487 514 - -
Armi1g00395 681 Gene3D - 316 443 IPR036427 GO:0005515(InterPro)
Armi1g00395 681 MobiDBLite consensus disorder prediction 10 27 - -
Armi1g00395 681 MobiDBLite consensus disorder prediction 642 666 - -
Armi1g00395 681 SUPERFAMILY Bromodomain 326 445 IPR036427 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00395 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
20216 Armi1g00395 Armi7g00260
20217 Armi1g00395 Armi8g02541
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:7326721 Armi8g01849 Armi-Chr8:75198981 dispersed
Armi Armi-Chr3:17635140 Armi1g00395 Armi-Chr1:7326721 transposed
Armi Armi-Chr1:7326721 Armi7g00260 Armi-Chr7:4479045 wgd
Armi Armi-Chr1:7326721 Armi8g02541 Armi-Chr8:94142969 wgd