AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Armi1g00398 | ATGAAGGGTCATTGTATCAAATCCTTAAAGATGTTGTTGAACTGTGGTATCGAGGATTTTCATGATGATGGTTTTGAGGGTTCAATGGATGAGGACCACATTTTTAGAGAGGTGTTCTTTGGACATGGAAATGGTAGAAGTAGTAAAAGGTGTCTTGTAACTGGATCATTCAATTTTGAAAATGACAAAAAGATGCCTAAAAATATCTCATTTTGTTCAGACAGTGACAATTCAGTCATGACAAGTCAAGAAGACTTTCAAAGTAGCATCTCTGAAGAGTTTGCTTTATGGATGAGAAATGGTCCCGATGTTGAAGTTAAGCGAAGGAAGGTGTCATCTGGAGAACATTCTAACACTAAATCTTATCTAGAAAAGGTAGTCAAGTCTTCAAATGATCAGAAGGTATATGATGTAAGTAAGGCAATTGCAATACCTGTTTCTGAGGAGAGTCATGTCAAGAAGCTTCTACTTACTGGGCCGAAACCAGTTCAATGTTCCAAGCAGAGATGGAAAGATTCTTCCTTCATTGAACTTGATAAAGATGAATTATCAGTTCCCCTTAAAGATCCCACTGTCGATCCTAAACCCCTTTTGCGTTATCACACCTATTGCTTACTTAGAGCAGCAGGGTGGGTAATCGGGAGGCGTAACAGAATCACACATTGTAAAGGGCGTGGAGAGTATGTCTTCAAATCTCCTGAAGGAAGGCCAATTCGTCAATTTCAAAGAGCTTGGAACATGTGTGGGAAAAGGTTAGTTGAAGATGCAAAATATATTGATTTCTGTGATGGCATACGGTGGATAGATTTGACTAAGTTTTGCTCTGATCTTTCTAATGCATTGACAGAGGTCGAAGAACTGAGAAATTCAGAAGCTGCAACTGCCTTAGCTCATCGGTGGTACTTGCTTGATCCTTTTGCGAAAGTGGTGTTCATTGACAAGAGACTGTCGTGGCTGAAAGAAGGGAAAGAAGTCAGAGCAGAAAGAAGTGTGATGAATAGTTCATATTTGAATTGTAATGTTTTACCCTCTAAAAAAGTAGAGCAGAACACCAAAAAAACTGGGAAAAAGAGTAGTAGCATGGTTCCATTTCCCTCTCCAGCCTGCAGATCCAATAGAACTTATTGTCAAACAAATAACCTGTATGGAGTTCCAATTTCTTCTGCAATTGCAAATACATCAGCTGGAGTGTCTGAATCTATCTTTCTGTGTCAAAATGGCATGGAATTTTGGGCAGGGTGTATGGAGAAGGGTAAGCACTGCTATGAAACCCCACAAATAAGGATGGACAATTCATCTTTTGCACTGGATGCTATCTTGAATACGAATGAACATGAGAAATCAGAGAAGATACACGAGATCAAGTTGACCAATTTGGTCGGACAGAATCAGTTTGGTTTTTATGATCCTTACGGGTTGCATGAGATCAGTGAGAGCAGTGTTCAATTAAATTTAGATAATGCAGAAAGTTATGGAAGTTGTTTGAAGTCATCACTTTGTTCTCCGAAGGACTGCCTTAAGAAAGAACCGTCAAGATTCAAGACATCAGCCCACCATTCTGGAAGTCCCAAGATCTCGATCAGATATGAGAAGTCCAATAAGAGTCAAAAGAAGAAAAAAGGGAACTGTCACCTTAAGGATGACGATCTTTTACTCTCAGCTATATTAAGTAACCGATCTACAACAAAACGGTCAGGTGTAAAAAAGAATTCTCGTGTTCCTAAAGTTATTAGGAAGTACAAGAGCCAAAAAGGCAGTTGCAGGTTGCTTCCATGCAGTTTTACAAAGGGTAGACAGCAGCATCACGCACAAGGGAAGTGGTCTGGCTTTGGTGTAAGAACTGTATTGACTTTGTTGATAGATCTTGGCGTTATTCATCTCAATGAAGTAATCCAATACAGGAATCCGGAGGATGATTCAGTGGTGAAGGATGGCCTTGTAACCCGAGATGGTATTTTGTGTTGCTGTTGTAAGAAGGTGCTTTCTGTCTCTGAGTTCAAGAATCATGCCGGTTTTGGCGTGAAACGTCCATGTTTAAATCTTTTTATGGAGTCTGGAAAATCATTCACCTTATGCCAACTGGAAGCTTGGTCAACTGAATACAAGGTCAGGAAAAGTGTCATACGAACTGTACATGATGAGGAGATTGACCAAAATGATGATAGCTGTGGTCTTTGTGGTGATGGAGGTGAGTTGATATGCTGTGATAATTGCCCCTCAACCTTTCATCAAGCATGCTTGTCTACACAGGAGCTACCTGAAGGCAATTGGTATTGTTCAATGTGCTGTTGCTGTAGTTGCGGGAATGTAGTCAATCATATTGAGACTTCGGTCTCTAAAGCTCTGAAATGTTTGCAGTGCGAACACAGATATCATGTTGAATGCATCAAAGAGAACGGGATTGAGAGGGAATTGGTGGCTTCTAACTGGTTCTGTGGAGAAACCTGTGAGAAGATTCACTCAGGTCTTCAGTCCCGGATTGGATGTGTGAATCCCATCTCTGATGGCTTCTCGTGGACCGTTCTGAGGTGTATTCATGGTGACCAAAAGGTTCATTCTGCTCAGAGTTTTGTTGCTCTGAAGGCGGAATGCAATCTAAAACTAGCTGTTGCCCTTACAATCATGGAGGAGTGTTTCCTCCCCATGGTGGATACAAGGACAGGCATCCATATGATACCACATGTATTGTACAACTGGGGATCAGAATTCATCCGTCTCAACTATGAGGGATTCTACACAGTAGTCCTGGAGAAAGATGACATTTTACTCTGTGCGGCATCCATAAGGATCCATGGGGCAACGGTTGCAGAGTTGCCCCTCATTGCGACATGCAGCAGATATAGGCGTCAAGGAATGTGTAAGCGCCTCATGAATGCTATTGAAGAGATGCTCAAGTCCTTCAAAGTTGAGAAGCTAGTGGTATCTGCTATCCCTAGCGTAGTTGATACATGGACAGAGGGCTTCGGTTTCTCACGATTGGAAGCCAATGAGAAGAAGAGCCTGGACAAAACCAATCTCATGGTGTTCCCAGGAACAGTATGGCTCCAGAAGCCCATGTACCATGGGTCAATCCAGAGCAAGCACTTTCATGGTGCTGCAACAGAAGCTGAAAACCTGAATCTTGAAGAAACTACGGCTCTGCTGGATATGGTGCCGGTTGACTACAAGAGATTCTCGCAAGAGGATGGAAACCGAGATGATAACTTGGTAGAACAGGTTTCAAAGCTTTCGTGCGTGCCAAAGATGGAAGGAAGTTTAGCCGAATCAGGTTGTGATGTAACATTGTCTGTAAATGTATAA | 3300 | 41.85 | MKGHCIKSLKMLLNCGIEDFHDDGFEGSMDEDHIFREVFFGHGNGRSSKRCLVTGSFNFENDKKMPKNISFCSDSDNSVMTSQEDFQSSISEEFALWMRNGPDVEVKRRKVSSGEHSNTKSYLEKVVKSSNDQKVYDVSKAIAIPVSEESHVKKLLLTGPKPVQCSKQRWKDSSFIELDKDELSVPLKDPTVDPKPLLRYHTYCLLRAAGWVIGRRNRITHCKGRGEYVFKSPEGRPIRQFQRAWNMCGKRLVEDAKYIDFCDGIRWIDLTKFCSDLSNALTEVEELRNSEAATALAHRWYLLDPFAKVVFIDKRLSWLKEGKEVRAERSVMNSSYLNCNVLPSKKVEQNTKKTGKKSSSMVPFPSPACRSNRTYCQTNNLYGVPISSAIANTSAGVSESIFLCQNGMEFWAGCMEKGKHCYETPQIRMDNSSFALDAILNTNEHEKSEKIHEIKLTNLVGQNQFGFYDPYGLHEISESSVQLNLDNAESYGSCLKSSLCSPKDCLKKEPSRFKTSAHHSGSPKISIRYEKSNKSQKKKKGNCHLKDDDLLLSAILSNRSTTKRSGVKKNSRVPKVIRKYKSQKGSCRLLPCSFTKGRQQHHAQGKWSGFGVRTVLTLLIDLGVIHLNEVIQYRNPEDDSVVKDGLVTRDGILCCCCKKVLSVSEFKNHAGFGVKRPCLNLFMESGKSFTLCQLEAWSTEYKVRKSVIRTVHDEEIDQNDDSCGLCGDGGELICCDNCPSTFHQACLSTQELPEGNWYCSMCCCCSCGNVVNHIETSVSKALKCLQCEHRYHVECIKENGIERELVASNWFCGETCEKIHSGLQSRIGCVNPISDGFSWTVLRCIHGDQKVHSAQSFVALKAECNLKLAVALTIMEECFLPMVDTRTGIHMIPHVLYNWGSEFIRLNYEGFYTVVLEKDDILLCAASIRIHGATVAELPLIATCSRYRRQGMCKRLMNAIEEMLKSFKVEKLVVSAIPSVVDTWTEGFGFSRLEANEKKSLDKTNLMVFPGTVWLQKPMYHGSIQSKHFHGAATEAENLNLEETTALLDMVPVDYKRFSQEDGNRDDNLVEQVSKLSCVPKMEGSLAESGCDVTLSVNV | 1099 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Armi1g00398 | 1099 | MobiDBLite | consensus disorder prediction | 511 | 542 | - | - | |
| Armi1g00398 | 1099 | SMART | PHD-3 | 722 | 763 | IPR001965 | - | |
| Armi1g00398 | 1099 | SMART | PHD-3 | 764 | 816 | IPR001965 | - | |
| Armi1g00398 | 1099 | Pfam | Tify domain binding domain | 645 | 695 | IPR032308 | - | |
| Armi1g00398 | 1099 | PANTHER | PHD FINGER PROTEIN 12 | 132 | 1062 | - | GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER) | |
| Armi1g00398 | 1099 | CDD | NAT-SF | 914 | 975 | - | - | |
| Armi1g00398 | 1099 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 708 | 784 | IPR013083 | - | |
| Armi1g00398 | 1099 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 909 | 990 | IPR016181 | - | |
| Armi1g00398 | 1099 | Gene3D | - | 884 | 1008 | - | - | |
| Armi1g00398 | 1099 | ProSiteProfiles | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 870 | 1020 | IPR000182 | GO:0016747(InterPro) | |
| Armi1g00398 | 1099 | Pfam | PHD-finger | 723 | 762 | IPR019787 | - | |
| Armi1g00398 | 1099 | ProSiteProfiles | Zinc finger PHD-type profile. | 720 | 765 | IPR019787 | - | |
| Armi1g00398 | 1099 | SUPERFAMILY | FYVE-PHD zinc finger | 701 | 763 | IPR011011 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Armi1g00398 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 20219 | Armi1g00398 | Armi7g00266 | |
| 20220 | Armi1g00398 | Armi8g02535 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Armi | Armi-Chr1:7365577 | Armi8g00956 | Armi-Chr8:27493320 | dispersed | |
| Armi | Armi-Chr17:39045624 | Armi1g00398 | Armi-Chr1:7365577 | transposed | |
| Armi | Armi-Chr1:7365577 | Armi7g00266 | Armi-Chr7:4574719 | wgd | |
| Armi | Armi-Chr1:7365577 | Armi8g02535 | Armi-Chr8:94045319 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Armi1g00398 | ACH | 1 | 1027 | PHD Transcription Factor family | AT3G14980 | 39.469 | 0.0 | 699.0 | |
| Armi1g01876 | . | 695 | 736 | PHD Transcription Factor family | AT5G58610 | 45.652 | 7.92e-08 | 54.3 | |
| Armi1g02354 | . | 1 | 1003 | PHD Transcription Factor family | AT4G14920 | 42.684 | 0.0 | 754.0 | |
| Armi1g03060 | ACH | 5 | 597 | PHD Transcription Factor family | AT3G24440 | 47.002 | 5.83e-176 | 510.0 | |
| Armi1g03702 | ACH | 3 | 685 | PHD Transcription Factor family | AT4G30200 | 42.254 | 5.33e-167 | 490.0 | |
| Armi1g03882 | . | 17 | 1028 | PHD Transcription Factor family | AT5G58610 | 37.114 | 0.0 | 639.0 | |
| Armi2g02319 | . | 36 | 446 | PHD Transcription Factor family | AT5G57380 | 38.126 | 2.61e-91 | 290.0 | |
| Armi3g00622 | . | 130 | 264 | PHD Transcription Factor family | AT5G57380 | 25.325 | 1.54e-09 | 59.3 | |
| Armi3g00889 | . | 130 | 215 | PHD Transcription Factor family | AT5G57380 | 30.392 | 1.74e-09 | 60.1 | |
| Armi3g01825 | . | 29 | 160 | PHD Transcription Factor family | AT5G58610 | 29.545 | 1.16e-08 | 50.4 | |
| Armi3g01831 | . | 29 | 160 | PHD Transcription Factor family | AT5G58610 | 28.788 | 1.79e-08 | 50.1 | |
| Armi3g03024 | . | 1545 | 1704 | PHD Transcription Factor family | AT5G35210 | 38.125 | 5.33e-22 | 99.4 | |
| Armi3g03868 | . | 15 | 672 | PHD Transcription Factor family | AT5G22260 | 49.481 | 0.0 | 635.0 | |
| Armi3g03905 | . | 10 | 406 | PHD Transcription Factor family | AT5G22260 | 32.569 | 6.36e-63 | 221.0 | |
| Armi4g02357 | . | 27 | 174 | PHD Transcription Factor family | AT5G58610 | 30.405 | 3.18e-13 | 64.3 | |
| Armi4g02358 | . | 27 | 174 | PHD Transcription Factor family | AT5G58610 | 30.405 | 1.88e-13 | 64.3 | |
| Armi4g02506 | ACH | 681 | 760 | PHD Transcription Factor family | AT4G14920 | 35.294 | 1.16e-08 | 58.2 | |
| Armi4g03451 | ACH | 41 | 823 | PHD Transcription Factor family | AT3G53680 | 52.774 | 0.0 | 831.0 | |
| Armi5g01583 | ACH | 685 | 753 | PHD Transcription Factor family | AT4G14920 | 39.189 | 2.11e-07 | 53.9 | |
| Armi5g02548 | . | 49 | 195 | PHD Transcription Factor family | AT3G24440 | 27.329 | 3.95e-09 | 58.2 | |
| Armi5g03132 | . | 26 | 159 | PHD Transcription Factor family | AT5G58610 | 27.007 | 5.00e-06 | 48.1 | |
| Armi6g00425 | . | 253 | 976 | PHD Transcription Factor family | AT2G36720 | 47.361 | 0.0 | 673.0 | |
| Armi6g00699 | . | 1542 | 1706 | PHD Transcription Factor family | AT5G35210 | 86.667 | 9.58e-88 | 295.0 | |
| Armi6g00840 | . | 519 | 993 | PHD Transcription Factor family | AT2G36720 | 47.589 | 1.61e-159 | 478.0 | |
| Armi6g01741 | . | 615 | 661 | PHD Transcription Factor family | AT5G22260 | 44.681 | 1.77e-06 | 50.4 | |
| Armi6g02024 | . | 27 | 160 | PHD Transcription Factor family | AT5G58610 | 28.261 | 7.27e-10 | 58.2 | |
| Armi6g02351 | . | 1 | 1593 | PHD Transcription Factor family | AT5G12400 | 37.982 | 0.0 | 1026.0 | |
| Armi7g00266 | ACH | 7 | 1025 | PHD Transcription Factor family | AT3G14980 | 42.609 | 0.0 | 785.0 | |
| Armi7g01249 | . | 13 | 984 | PHD Transcription Factor family | AT4G14920 | 45.243 | 0.0 | 800.0 | |
| Armi7g02210 | ACH | 7 | 597 | PHD Transcription Factor family | AT3G24440 | 46.935 | 1.46e-172 | 502.0 | |
| Armi8g00621 | ACH | 1 | 685 | PHD Transcription Factor family | AT4G30200 | 45.291 | 0.0 | 539.0 | |
| Armi8g00934 | . | 141 | 261 | PHD Transcription Factor family | AT5G57380 | 30.882 | 2.86e-07 | 50.1 | |
| Armi8g00956 | . | 207 | 984 | PHD Transcription Factor family | AT4G14920 | 45.906 | 0.0 | 705.0 | |
| Armi8g01879 | . | 1546 | 1704 | PHD Transcription Factor family | AT5G35210 | 29.825 | 1.27e-13 | 72.4 | |
| Armi8g01890 | . | 861 | 942 | PHD Transcription Factor family | AT1G05380 | 45.238 | 3.06e-17 | 77.4 | |
| Armi8g02535 | ACH | 470 | 1025 | PHD Transcription Factor family | AT3G14980 | 54.116 | 0.0 | 614.0 | |
| Armi8g02814 | ACH | 29 | 160 | PHD Transcription Factor family | AT5G58610 | 29.851 | 3.72e-10 | 60.8 | |
| Armi9g00314 | . | 226 | 977 | PHD Transcription Factor family | AT2G36720 | 46.164 | 0.0 | 661.0 | |
| Armi9g00433 | ACH | 161 | 300 | PHD Transcription Factor family | AT3G53680 | 52.857 | 3.72e-42 | 160.0 | |
| Armi9g02625 | . | 130 | 272 | PHD Transcription Factor family | AT5G57380 | 28.221 | 6.71e-08 | 53.5 | |
| Armi10g01620 | . | 81 | 663 | PHD Transcription Factor family | AT5G22260 | 31.26 | 3.01e-82 | 272.0 | |
| Armi11g00251 | ACH | 685 | 753 | PHD Transcription Factor family | AT4G14920 | 39.189 | 3.53e-07 | 53.5 | |
| Armi13g01119 | ACH | 684 | 760 | PHD Transcription Factor family | AT4G14920 | 35.366 | 3.55e-07 | 53.1 | |
| Armi14g01588 | . | 717 | 801 | PHD Transcription Factor family | AT3G14980 | 33.028 | 3.95e-08 | 56.6 | |
| Armi14g01589 | . | 726 | 807 | PHD Transcription Factor family | AT3G14980 | 31.731 | 1.52e-06 | 48.9 | |
| Armi14g01604 | ACH | 29 | 160 | PHD Transcription Factor family | AT5G58610 | 31.343 | 3.82e-11 | 64.3 | |
| Armi15g01652 | . | 27 | 160 | PHD Transcription Factor family | AT5G58610 | 25.926 | 6.38e-06 | 47.4 | |
| Armi16g01078 | . | 172 | 301 | PHD Transcription Factor family | AT3G53680 | 54.615 | 7.88e-40 | 150.0 | |
| Armi16g01659 | . | 312 | 959 | PHD Transcription Factor family | AT1G05380 | 46.526 | 0.0 | 586.0 | |
| Armi17g00768 | . | 365 | 975 | PHD Transcription Factor family | AT5G58610 | 32.796 | 1.92e-99 | 327.0 | |
| Armi18g00675 | ACH | 650 | 719 | PHD Transcription Factor family | AT5G36670 | 42.667 | 5.56e-07 | 52.8 | |
| Armi18g00987 | . | 15 | 667 | PHD Transcription Factor family | AT5G22260 | 34.694 | 8.16e-118 | 365.0 |