AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00407 ATGGCTAATCGAAATCTGGAGAAATTGGCATCGATCGATGCTCAGTTGAGGCTTTTAGTTCCTGGAAAAGTTTCTGAAGATGATAAACTTATTGAGTATGATGCTTTGCTTTTAGATAAGTTTCTTGATATTCTTCAAGATTTACATGGGGAGGATCTCAAAGAAACGGTTCAAGAATGTTACGAGCTTTCTGCTGAGTACGAAGGAAAGCGCGATCCGAAGAAGCTGGAGGAGCTTGGAAGTGTGTTAACAAGTTTAGATCCAGGGGACTCCATTGTTATTGCAAAAGCTTTCTCACACATGCTTAATTTAGCCAATCTGGCTGAAGAGGTTCAGATTGCTTATCGTCGCAGGATTAAATTAAAGAAGGGTGATTTTGCCGATGAAGCCATTGCAACGACTGAATCTGATATCGAAGAAACGCTCAAGAAACTTGTGCATCAGCTCGGGAAATCACCTGAAGAAGTTTTCGATGCACTCAAGAATCAAACGGTTGATTTGGTCTTGACCGCTCATCCGACTCAATCTGTTCGAAGATCGTTGCTTCAAAAGCACGGAAGGATTCGTGACTGTTTGGCGCAGTTATATACCAAAGATATCACTCCTGATGATAAACAGGAACTAGATGAGGCTTTGCATAGAGAAATTCAAGCTGCTTTCCGGACAGATGAGATCCGTAGGACTCCTCCAACCCCACAAGATGAAATGAGAGCTGGAATGAGCTACTTTCATGAAACTATCTGGAAGGGTGTTCCTAAGTTCTTGCGTCGTGTGGATACGGCTCTTAAGAATATTGGTATCAATGAACGTGTTCCGTATAATGCACCTCTTATACAGTTTTCTTCCTGGATGGGCGGTGACCGTGATGGCAATCCGAGGGTAACTCCTGAGGTAACAAGAGATGTTTGCTTACTCGCTAGAATGATGGCTGCAAACATGTACTTTTCCCAGATAGAAGATCTAATGTTTGAGATGTCCATGTGGCGTTGTAACGACGAGCTTCGTGTTCGAGCAGAAGAACTCTATAGAACAGCAAGGAGAGATGTGAAGCACTACATAGAGTTCTGGAAACAGGTTCCTCCCACGGAACCTTATCGTGTGATTCTTGGCGACGTAAGGGACAGGTTATACAACACACGTGAACGAGCTCGCCATCTGCTCGCTCACGGGAAATCCGAAATACCGGAGGAAGCAGTTTATACCAATGTCGAACAGTTCTTGGAACCTCTCGAGCTATGCTACCGATCTCTATGCGCTTGCGGTGACGTTGTGATTGCTGATGGAAGTCTTCTCGATTTTCTAAGGCAAGTGTCGACCTTTGGACTGTCGCTTGTGAAACTCGATATACGTCAAGAATCTGATCGCCACACGGACGTCCTCGATGCCATTACTCAACATTTGGAAATCGGATCCTACCGTGAGTGGTCCGAAGAAAAGCGCCAAGAATGGCTTCTGGCGGAGCTCGGTGGAAAACGGCCTCTTTTTGGTCCGGATCTCCCCAAAACCGAGGAAATCGCGGATGTTTTGGATACCTTCAATGTCTTGGCGGAACTCCCATCGGATTGCTTCGGCGCTTACATCATTTCAATGGCTACATCGGCTTCCGATGTGCTTGCTGTCGAGCTTCTTCAACGTGAATGTCATGTGAAACAATCGTTAAGGGTGGTTCCGCTTTTCGAGAAACTGGCGGATCTCGAGGCGGCTCCGGCGGCCATGACTCGGCTTTTCTCGATCGAATGGTACAAAAACCGCATCAACGGTAAGCAAGAAGTCATGATCGGGTACTCCGATTCGGGAAAAGACGCCGGAAGGCTTACCGCTGCATGGCAGCTTTACAAGGCTCAAGAAGAGCTTATTAAGGTTGCAAAGGAGTTCGGAGTTAAGCTCACGATGTTCCACGGCCGTGGTGGAACCGTCGGGAGAGGAGGCGGACCCACCCATCTCGCCATCCTGTCTCAGCCACCGGAGACCATTCATGGGTCTTTAAGAGTCACCGTTCAGGGTGAGGTCATCGAGCAGTCTTTCGGTGAGGAACATTTGTGCTTCCGAACACTTCAACGGTTTTGCGCAGCTACCCTCGAGCACGGGATGAATCCCCCTATCTCACCACATCCTGAATGGCGTAAACTTATGGACGAGATCGCAGTTTTCGCAACCGAGCAGTATCGTTCTATCGTATTCCAGGAACCACGTTTCGTCGAGTATTTCCGCCTCGCCACACCGGAACTGGAGTACGGACGTATGAATATCGGAAGTCGCCCATCGAAAAGAAAACCGAGCGGAGGCATAGAATCGCTCCGAGCTATTCCATGGATCTTCGCATGGACTCAAACCCGGTTCCATCTCCCGGTTTGGCTCGGCTTCGGGGCTGCATTCAAACATGCCATTCAAAAGGACAGCAAGAATCTAAAAATGCTACAAGAAATGTACAAAACCTGGCCTTTCTTTAGGGTCACGATCGATTTAGTCGAAATGGTGTTTGCTAAAGGAGATCCCGGCATTGCCGCACTGAACGACAAGCTCCTCGTCTCCGAAGATCTATGGTCTTTCGGAGAATCTTTGAGAGCAAACTATGAAGAAACCAAGGATTATCTCCTCAAGATCGCTGGACACAAGGATCTTCTCGAGGGCGATCCCTACTTGAAACAAAGACTTCGTCTGCGTGATTCATACATCACGACCTTGAACGTATGCCAAGCTTACACGCTAAAACGGATTCGTGATCCAAACTATCATGTGACATTGAGGCCTCATATCTCGAAAGAGTACTCCGAGCCAAGCAAACCGGCCGATGAACTGATCACCCTGAACCCGACCAGCGAGTATGCACCAGGTCTCGAGGACACCCTGATCCTGACCATGAAGGGCATTGCTGCCGGAATGCAGAACACCGGTTAA 2898 47.83 MANRNLEKLASIDAQLRLLVPGKVSEDDKLIEYDALLLDKFLDILQDLHGEDLKETVQECYELSAEYEGKRDPKKLEELGSVLTSLDPGDSIVIAKAFSHMLNLANLAEEVQIAYRRRIKLKKGDFADEAIATTESDIEETLKKLVHQLGKSPEEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRDCLAQLYTKDITPDDKQELDEALHREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQIEDLMFEMSMWRCNDELRVRAEELYRTARRDVKHYIEFWKQVPPTEPYRVILGDVRDRLYNTRERARHLLAHGKSEIPEEAVYTNVEQFLEPLELCYRSLCACGDVVIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDVLDAITQHLEIGSYREWSEEKRQEWLLAELGGKRPLFGPDLPKTEEIADVLDTFNVLAELPSDCFGAYIISMATSASDVLAVELLQRECHVKQSLRVVPLFEKLADLEAAPAAMTRLFSIEWYKNRINGKQEVMIGYSDSGKDAGRLTAAWQLYKAQEELIKVAKEFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPHPEWRKLMDEIAVFATEQYRSIVFQEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHAIQKDSKNLKMLQEMYKTWPFFRVTIDLVEMVFAKGDPGIAALNDKLLVSEDLWSFGESLRANYEETKDYLLKIAGHKDLLEGDPYLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYHVTLRPHISKEYSEPSKPADELITLNPTSEYAPGLEDTLILTMKGIAAGMQNTG 965
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00407 965 Pfam Phosphoenolpyruvate carboxylase 34 965 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Armi1g00407 965 Gene3D Phosphoenolpyruvate-pyruvate domain 308 443 - -
Armi1g00407 965 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 27 965 IPR021135 GO:0005829(PANTHER)|GO:0006099(InterPro)|GO:0008964(PANTHER)|GO:0008964(InterPro)|GO:0009507(PANTHER)|GO:0015977(InterPro)|GO:0048046(PANTHER)|GO:0048366(PANTHER)
Armi1g00407 965 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 965 IPR022805 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Armi1g00407 965 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 591 603 IPR033129 -
Armi1g00407 965 SUPERFAMILY Phosphoenolpyruvate-pyruvate domain 33 965 IPR015813 GO:0003824(InterPro)
Armi1g00407 965 PRINTS Phosphoenolpyruvate carboxylase signature 440 460 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Armi1g00407 965 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Armi1g00407 965 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Armi1g00407 965 PRINTS Phosphoenolpyruvate carboxylase signature 589 609 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Armi1g00407 965 PRINTS Phosphoenolpyruvate carboxylase signature 631 660 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Armi1g00407 965 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Armi1g00407 965 PRINTS Phosphoenolpyruvate carboxylase signature 763 789 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Armi1g00407 965 FunFam Phosphoenolpyruvate carboxylase 1 308 443 - -
Armi1g00407 965 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00407 K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
20229 Armi1g00407 Armi7g00271
20230 Armi1g00407 Armi8g02525
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:7534070 Armi3g01845 Armi-Chr3:53339612 dispersed
Armi Armi-Chr1:7534070 Armi7g00271 Armi-Chr7:4734302 wgd
Armi Armi-Chr1:7534070 Armi8g02525 Armi-Chr8:93841524 wgd