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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00427 ATGGATGAGAACGTTCAACATGTAAGGTGGACAAATGAAGCCATCAAATGTTTTTTAGAGAGTTGTATAGAAGAGATCAGTAAAGTCGGTCGAAATGGGGGTAGTCTTCGAAAAGAATCGTGGGTAAATGTGGCAGGAAAAATTGAGCAAGTGTGTCACATAAAGCTGACGCAAAAACAACTGAAAAATCACTATGATTACTTAAAAGGGAAGTACGCGGGATGGGTATACTTAAGGAATAAAACAGGGAATATTTCTGACCCAGTTCTGAATATGTTCAACTTATCTAATCAAGAATGGGAAGATTTTTTCAAGGGACATCCAAAGGCAAAAACTTTAAAGACATCACCATTGTTATTTCCTGAACTGTGTATTGCTTTATTCGAGGGGACTTCTGCAACCGGATCTCGTGCTTATGCCCCTAGTTCAACTCGTGAGAGGACTTATATGGTTTCATCGTCATCATTTACATCTCATATCCACAATGTTCAAAATGTGGGGGATGAAGATGATGATGATGTGGAGGAAATAGCAAATGTCAATAAATTGAGTGTAAATCCTTCAAATGTCTAA 573 37.87 MDENVQHVRWTNEAIKCFLESCIEEISKVGRNGGSLRKESWVNVAGKIEQVCHIKLTQKQLKNHYDYLKGKYAGWVYLRNKTGNISDPVLNMFNLSNQEWEDFFKGHPKAKTLKTSPLLFPELCIALFEGTSATGSRAYAPSSTRERTYMVSSSSFTSHIHNVQNVGDEDDDDVEEIANVNKLSVNPSNV 190
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00427 190 Pfam Myb-SANT-like DNA-binding domain 9 102 IPR024752 -
Armi1g00427 190 PANTHER MYB-SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 9 176 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00427 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:8036371 Armi8g00791 Armi-Chr8:22089695 dispersed
Armi Armi-Chr1:8036371 Armi15g00319 Armi-Chr15:8812526 wgd
Armi Armi-Chr1:8036371 Armi9g02042 Armi-Chr9:54451881 wgd