AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00439 ATGGATTCGGTTAATCAATTGGCTCTTACCTCAAATAAGACCAGATTGGCTCGTACTTTTACCAAAGTTTTGCATATTCGAGCTGTGGCAGGAGCAGCAACGGTAGATAGAAGTCGAAAAACTAAGGTGAGTGAAAAGGTCAAGAAGGATGACGATGGAAGGAAGTTGGTTAGTGACGAAAATGACGAGTTTCGGAACAGAGCAGCGTTGGATGCGTTTATTGCCAAAGTTTTTGCGACCATTTCTTCCGTGAAAGCTGCATATGCCCAGTTGCAGTATGCCCAATCTCCTTATGACGCCGAAGGGATTCAGTCGGCTGATCAGATCATGGTCTCTGAACTCAAGAGCTTATCGGAGTTCAAGCAGTCGTTCTTGAAGAAACATCTTGACGACGACTCCCCTGAAACCACTCACCTGTTGGCTGAAATTCGTGAACAGAAGAATCTCTTAACAATGTACGAAATCACCGGGAAAAAGCTGGACAGTCAGAGCAAGCTCAAAGACTCCGAGATCATATTCTTGAAAGAGAAATTAGACGAAGCCAACAGAGAAAATAAGTCGATCGAGAAGAGATTAAACTCAAGCGGGCCTTTATCGCCTCACCAGAAGCTTCGTTTTCCATCGCTTGACGATTTTGTATCATCTCTTCGGCAAACGACGAAATCCGTTAGAAGTTTCGTGAAGCTCATGATCGGTGAAATGGAATCAGCCAATTGGGATTTGGATGCAGCTGCGAGTTCGATCCAACCAGATGTTGTTTACTCGGATCCCACCCATAAATGCTACGCATTCGAGTCATTCATTTGTCGAGTGATGTTCGATGGGTTCAATCACCCAAGTTTCTCCATCGTCAACGATTCCGAGTCTCCAACCAATGATAAACGGTTTTTCATCGACAATTTCATGGAACTAAAATCCTTGAAAGCAAAAGAGTACATTAAATGGAAACCAAAATCAATGTTCACCAAATTTTGTTGGTCCAAGTACCTGAAACTCGTTCATCCCGTAATGGAATCCTCTCTTTTCGGGAACTCGAATCAACGAAATCTCGTGGCGGCTGGAAAATTCCCTAAAACAACGTTCTTTTCGTCGTTCGCGGATGTCGCGAAACGGGTTTGGCTTCTACATTGTTTGGCATTCGCGGTGGATCGAAACGAGGCGGCCGCCGCCACGTTTCAGGTGAGGAAATGCAGCCGGTTCACGGAGGTGTTCATGGAAAGCGTAAACGAACCACCACCAAAAGCCTCGCCGGAGGTGGCGTTCACGGTGGTGCCGGGGTTCAAGGTGGGTAAAACCGTTATACAGTGTCAAGTGTATTTGAGTTGA 1326 45.63 MDSVNQLALTSNKTRLARTFTKVLHIRAVAGAATVDRSRKTKVSEKVKKDDDGRKLVSDENDEFRNRAALDAFIAKVFATISSVKAAYAQLQYAQSPYDAEGIQSADQIMVSELKSLSEFKQSFLKKHLDDDSPETTHLLAEIREQKNLLTMYEITGKKLDSQSKLKDSEIIFLKEKLDEANRENKSIEKRLNSSGPLSPHQKLRFPSLDDFVSSLRQTTKSVRSFVKLMIGEMESANWDLDAAASSIQPDVVYSDPTHKCYAFESFICRVMFDGFNHPSFSIVNDSESPTNDKRFFIDNFMELKSLKAKEYIKWKPKSMFTKFCWSKYLKLVHPVMESSLFGNSNQRNLVAAGKFPKTTFFSSFADVAKRVWLLHCLAFAVDRNEAAAATFQVRKCSRFTEVFMESVNEPPPKASPEVAFTVVPGFKVGKTVIQCQVYLS 441
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00439 441 Coils Coil 171 191 - -
Armi1g00439 441 PANTHER PROTEIN GRAVITROPIC IN THE LIGHT 1 15 441 IPR040225 GO:0009639(InterPro)|GO:0009959(InterPro)
Armi1g00439 441 Pfam Plant protein of unknown function (DUF641) 66 191 IPR006943 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00439 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
20233 Armi1g00439 Armi7g00275
20234 Armi1g00439 Armi8g02514
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr15:13636948 Armi1g00439 Armi-Chr1:8563755 dispersed
Armi Armi-Chr1:8563755 Armi3g01500 Armi-Chr3:40072141 dispersed
Armi Armi-Chr1:8563755 Armi15g01214 Armi-Chr15:67224950 wgd
Armi Armi-Chr1:8563755 Armi7g00275 Armi-Chr7:4849407 wgd
Armi Armi-Chr1:8563755 Armi8g02514 Armi-Chr8:93622024 wgd