AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00457 ATGAGATTGAGGGAAAACATCAGTTTTCGTGTCTTATTGGCGATTATTAGCATTCTATCGCCATTAATGGAGTTCGGAGCAATCCAAATCGATGCATCAACGACTGGATGTGATTTGTTTCAAGGAAATTGGATTTCAGATCAATCGTATCCACTCTATAACGAATCAACCTGTCCTTTCCTTGAAAAGGAGTTCAACTGCGTCAACAATGGCCGTCCTGACCGTTTGTATCTCAAATACCGATGGGAACCTCACGGCTGCCGTTTATCCAGATTTGATGGTCGAAACTTCTTAGAAAAACTAAGAGGAAAAACAATAATGTTTGTAGGAGATTCGCTTAGCCGAAACCAGTGGTTGTCGATGCTATGCATGATACATTCTTCGGTGCCAACCGCAAATTACGCGGCCAATATCTCCGTGATTATGGATATGACCACTTACACCTTCACGGATTATGGGGTGAAAGTGATGTACCATCACAATTTATATCTAGTGGATATAGTGAAGAAGAGATTTGGGAGGGTCTTGAGTTTGGATACCTTGACAGCTGGCAAGCTGTGGTTGGGTGTTGATTACCTTGTCTTCAACACGTGGCACTGGTGGAACCGTAGAGGAGCTAGTCAACCATTTGATTATATACAAGAAGGAAGTCGTGTATATAAAGACATGGACAGAGTAGTGGCTTTCGGAAAGGCTGTTGCCACATGGGGTCGATGGGTCGATGCAAATGTTGTTCCGAACAAAACACAAGTGTTTTTTCAAGGGATATCACCATCACATTACAATGGCACCGACTGGGGAGAACCCAAGGCAAAATCCTGCTCCGGCCAGAAAATCCCTCTTCTCAGCTCCACCTATCCCGGAGTTTCACCGCCGGCACTGTCAGTCCTCAAGAACTCCCTCAAAACCATCAAGAAACCGGTGAAGTTGCTTGACATCACTTACCTTTCTCTGCTACGAAAAGACGGCCATCCGTCGGCTTACGGCTTAGGGCCGGTGGATTGCAGCCACTGGTGTCTCGCCGGAGTTCCAGATACGTGGAACGTTTTGCTTTACAATCTTATGTTTTAA 1071 45.19 MRLRENISFRVLLAIISILSPLMEFGAIQIDASTTGCDLFQGNWISDQSYPLYNESTCPFLEKEFNCVNNGRPDRLYLKYRWEPHGCRLSRFDGRNFLEKLRGKTIMFVGDSLSRNQWLSMLCMIHSSVPTANYAANISVIMDMTTYTFTDYGVKVMYHHNLYLVDIVKKRFGRVLSLDTLTAGKLWLGVDYLVFNTWHWWNRRGASQPFDYIQEGSRVYKDMDRVVAFGKAVATWGRWVDANVVPNKTQVFFQGISPSHYNGTDWGEPKAKSCSGQKIPLLSSTYPGVSPPALSVLKNSLKTIKKPVKLLDITYLSLLRKDGHPSAYGLGPVDCSHWCLAGVPDTWNVLLYNLMF 356
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00457 356 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 19 354 IPR029962 GO:0005794(PANTHER)|GO:0016413(PANTHER)|GO:0016413(InterPro)
Armi1g00457 356 Pfam GDSL-SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 89 353 IPR026057 GO:0016740(InterPro)
Armi1g00457 356 Pfam PMR5 N terminal Domain 36 87 IPR025846 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00457 K23877 xyloglucan O-acetyltransferase
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:9064875 Armi3g01557 Armi-Chr3:43077533 dispersed
Armi Armi-Chr1:9064875 Armi7g00278 Armi-Chr7:4917845 wgd
Armi Armi-Chr1:9064875 Armi8g02461 Armi-Chr8:92840394 wgd