AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00458 ATGTCATCGCCACCGCCACCGCCATCGCCGGAAATTCTCCTCATAGCTTCTCCTGACGGTCCAATCACCGCCTACGATCCTTACTCAGGTACTGTTTTAGCTCGCTTTAACGGCAGCCGATGTCCACGTAATGGCATCGCCATCGTCGGAAAAGATCGATTCGCCGTTTCTCATATTTCGCCGGAAACCGGTGCAGGTTCTGTTCGTTTTTATTACTGGTGGTCTCCGTCGTGTACACAGACTGTTCCTCTTCCTGAACCTGTTGCTCCACTCGCTGCTACCGTCGACGGATCGTATCTATTCGCCGGTGGAATTTCCGGCCGGATTCACGCGGTGTCGGTAACTTCAGGAGTCATAATCCGATCGTTTTCAGCTCATGAAAAACCGGTAAGTTGTCTAGCAAGCAATTGTGACGGATCGTTGCTTCTCTCCGGAAGCGACGACGGAACGATCGCTGTTCTTCCGATAATCCTTCTTCTAGATGCTTCGTTTGATACGGAATCGAGATTCTCGAATTTCAACCGGTTGATCGGACATGAATCGTCGGTGACTGGATTAACCGCCGGAATCGGAAGTTCCGGTAGCGTTATGATCTCGAGCTCCTTGGACTGGACTTGTAAGATCTGGAGCCTCGTGACCGGGATCCATCTCCAGACGGTGACATTTCCGGCACCGGTGTGGTGTACGGCGTTAGATCCGTCGGAGACGGAGTTGTACGGTGCAGGAACAGATGGATCGATATACAAAAGAAAGCTTAAAGTATCGACGAGAAAACAGGTCGCGAAAGGAGGAGAGACGGTGGCGTGGAGCGGAGATCATGGCGGAGCGGTGGTGGCGATGGAGATGTTGAATTACGGACGAACTCTTTTGACGGTTTGTGAGAACGGAGAGATTTGTGTATTGGAAGTTGAGAGTGGTAAGATGGTGAGTGGTTTTGGCGGGAAGATTGGAGGAGTGAGCGGAGTTGCGGTGGCGAGAGGCGGTGGTGGTTTTGGTAAGAGAGCGGAATGCGGTGGTTATTGTGGCGGAAAGGAGTTAGGTAAGCCGGTGGCGGAAATGGAGGAGGTTTTGAAAGTGGTGGTGGAAGACCGGCGGAGGGCGATTAGCAATCTGGAATCAGCAATTGAGATTAACGAAAGGTTACTGAAGCTGATGCTTAGGGAAGCTAAAGCAATTGCTAAATTTGATAAATCTAATCGTAAAATTAATATTTTTAACACCAAATGA 1227 50.2 MSSPPPPPSPEILLIASPDGPITAYDPYSGTVLARFNGSRCPRNGIAIVGKDRFAVSHISPETGAGSVRFYYWWSPSCTQTVPLPEPVAPLAATVDGSYLFAGGISGRIHAVSVTSGVIIRSFSAHEKPVSCLASNCDGSLLLSGSDDGTIAVLPIILLLDASFDTESRFSNFNRLIGHESSVTGLTAGIGSSGSVMISSSLDWTCKIWSLVTGIHLQTVTFPAPVWCTALDPSETELYGAGTDGSIYKRKLKVSTRKQVAKGGETVAWSGDHGGAVVAMEMLNYGRTLLTVCENGEICVLEVESGKMVSGFGGKIGGVSGVAVARGGGGFGKRAECGGYCGGKELGKPVAEMEEVLKVVVEDRRRAISNLESAIEINERLLKLMLREAKAIAKFDKSNRKINIFNTK 408
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00458 408 Pfam WD domain, G-beta repeat 119 152 IPR001680 GO:0005515(InterPro)
Armi1g00458 408 Pfam WD domain, G-beta repeat 175 210 IPR001680 GO:0005515(InterPro)
Armi1g00458 408 Gene3D - 8 153 IPR015943 GO:0005515(InterPro)
Armi1g00458 408 PANTHER WD-REPEAT PROTEIN 18 10 326 IPR045227 GO:0005656(PANTHER)|GO:0006261(PANTHER)|GO:0006364(PANTHER)|GO:0097344(PANTHER)
Armi1g00458 408 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 11 314 IPR011047 -
Armi1g00458 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 176 219 IPR001680 GO:0005515(InterPro)
Armi1g00458 408 Gene3D - 159 331 IPR015943 GO:0005515(InterPro)
Armi1g00458 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 153 IPR001680 GO:0005515(InterPro)
Armi1g00458 408 SMART WD40-4 263 302 IPR001680 GO:0005515(InterPro)
Armi1g00458 408 SMART WD40-4 116 155 IPR001680 GO:0005515(InterPro)
Armi1g00458 408 SMART WD40-4 169 210 IPR001680 GO:0005515(InterPro)
Armi1g00458 408 SMART WD40-4 213 251 IPR001680 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00458 K14829 pre-rRNA-processing protein IPI3
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:9081860 Armi2g00615 Armi-Chr2:13579756 dispersed