AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Armi1g00468 | ATGTATACACCATTTGGTATCAATTCATTATCTAAAACTAATGGTGCTTTTACAAGCAATGGTCAACATCCACGGTGGCTAGTGAGTTCCTCACCATGCAAAACCTCTAGGGTTTGCAGGTTCAAGATGTCTTTGCCTGTTCTACCACGTGCCACCATTGCAATGACATTAACACATGGCAACGATTTCCTTCTCGCCAATCTCGGCCAAACTAATGCGAGTTCTTCAGAAGTTGATGTTGGTAGCAGAATGGACGAACTAAAGGAAAAGACAAGAAGAGCTTTGATGACAGCTTCAAACCCCAGAATGAAGATGAAGCTATTGGACACAATTCAAAGACTCGGAATAGAGTATAGTTTTGATGAAGAGATCATCCATAAACTAATAGATCCCGTTGAAGGTCAGCTTGATGATGATTTATGTACAGTGGCACTACGTTTTCGCCTTCAACGAACCAATGGTCTCCATTCTAATTCTGATGTTTTTGAACCATTCCTGGATGCAAATGGTAAATTCAAAAAGTCATCAGTTGAAGATATAGAGGCAATGCTGAGTTTATATGAAGCTTCATACTTGGGTGCAAATGGGGAAGATGTTTTATCACAGGCTAAGGAATTTACCACCATACACCTCATGAAATCGGTTTCACAATTAACCCCCAAACTACGTGAAAACGTTCTTCATAGTTTAGAGCTACCAAGGCACCTGAGAATGGCTAGATTAGAATCAAGAAGGTATATTGAAGAATATGGCAATGAAAGTGATCACATCCCAAATTTGTTAGAACTTGCAAAGTTGGAATACAATCAAGTTCAATCACTCCACCAAATGGAGTTGGCTGAGATAACGAGGTGGTGGAGACATTTGGGTCTAGTAACTAAGCTAACTTTCGCCCGAGATCGCCCTCTTGAGTGTTTTCTATGGAGTGTTGGGCTCTTACCTGAGAGCAAGTATTCTGCCAACAGAATTGAACTAGCTAAAACCATTTCGATCTTGTTGGTCATTGATGATATATTTGACACCTATGGTTCATACGATGATCTTGTTTTGTTCACAAAAGCAATTCAAAGATGGGATTTGAAAGAAATGGAACAACTACCTGAGTACATGAAAATATGCTACATGGCCTTGTATAATACTACCAACGAGATTTGCTACGAGGTCCTCAAAAAACATGGCTTGAGTGTTCTGCCATTCCTATGCAAGACGTGGATTAACATGGTTGAAGCCTTTATGGTCGAAGCTGAATGGAGAAACGGAGGAACTACACCAAATCTCAAAGACTACATACAGAATGGGGTTACAACAGCAGGAACATACATGGCACTGGTGCATCTGTTCTTTCTCATGGGCGAAGGGGTAACTGCTGAAAACATGACACGTCTTCTTGATTCGTACCCTAGTTTCTTTTCTGTTGCTGGAACAATTCTTCGTCTTTGGGATGATCTGGGAACTTCCAAGGAAGAACAAGAAAGAGGGGATGTAGCATCAAGTATACAATTGATGATGACCGAGAAGAATATAACAAACGAGGAAGAGGGAAGGAAACAAATCTTGCAGCTTATCCACACATCATGGGAAGAACTGAATGCAGCGCTCGTTGCACCCAATGCATTGCCCCTTTCCATCATTAGAGTTGCCCTCAACATGTCAAGAGCTTCTCAAGTTGTTTATCAACATGACCAAGATACTTATTTCTCAGGTGTAGATGATCATGTAAAATATCTCTTCTTCACACCTATAGATATATAG | 1752 | 40.53 | MYTPFGINSLSKTNGAFTSNGQHPRWLVSSSPCKTSRVCRFKMSLPVLPRATIAMTLTHGNDFLLANLGQTNASSSEVDVGSRMDELKEKTRRALMTASNPRMKMKLLDTIQRLGIEYSFDEEIIHKLIDPVEGQLDDDLCTVALRFRLQRTNGLHSNSDVFEPFLDANGKFKKSSVEDIEAMLSLYEASYLGANGEDVLSQAKEFTTIHLMKSVSQLTPKLRENVLHSLELPRHLRMARLESRRYIEEYGNESDHIPNLLELAKLEYNQVQSLHQMELAEITRWWRHLGLVTKLTFARDRPLECFLWSVGLLPESKYSANRIELAKTISILLVIDDIFDTYGSYDDLVLFTKAIQRWDLKEMEQLPEYMKICYMALYNTTNEICYEVLKKHGLSVLPFLCKTWINMVEAFMVEAEWRNGGTTPNLKDYIQNGVTTAGTYMALVHLFFLMGEGVTAENMTRLLDSYPSFFSVAGTILRLWDDLGTSKEEQERGDVASSIQLMMTEKNITNEEEGRKQILQLIHTSWEELNAALVAPNALPLSIIRVALNMSRASQVVYQHDQDTYFSGVDDHVKYLFFTPIDI | 583 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Armi1g00468 | 583 | SFLD | Terpene Cyclase Like 1 C Terminal Domain | 259 | 582 | IPR034741 | - | |
| Armi1g00468 | 583 | Pfam | Terpene synthase, N-terminal domain | 70 | 230 | IPR001906 | GO:0010333(InterPro)|GO:0016829(InterPro) | |
| Armi1g00468 | 583 | SFLD | Isoprenoid Synthase Type I | 259 | 582 | - | - | |
| Armi1g00468 | 583 | Gene3D | - | 100 | 256 | IPR036965 | GO:0010333(InterPro)|GO:0016829(InterPro) | |
| Armi1g00468 | 583 | FunFam | Isoprene synthase, chloroplastic | 234 | 572 | - | - | |
| Armi1g00468 | 583 | SUPERFAMILY | Terpenoid synthases | 258 | 583 | IPR008949 | - | |
| Armi1g00468 | 583 | PANTHER | OS04G0344100 PROTEIN-RELATED | 82 | 565 | - | - | |
| Armi1g00468 | 583 | Pfam | Terpene synthase family, metal binding domain | 288 | 528 | IPR005630 | GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro) | |
| Armi1g00468 | 583 | CDD | Terpene-cyclase-plant-C1 | 83 | 580 | IPR044814 | GO:0010333(InterPro)|GO:0016102(InterPro) | |
| Armi1g00468 | 583 | Gene3D | Farnesyl Diphosphate Synthase | 73 | 566 | IPR008949 | - | |
| Armi1g00468 | 583 | SUPERFAMILY | Terpenoid cyclases-Protein prenyltransferases | 81 | 256 | IPR008930 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Armi1g00468 | K20979 | geranyl diphosphate diphosphatase [EC:3.1.7.11] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Armi | Armi-Chr11:23922769 | Armi1g00468 | Armi-Chr1:9332713 | dispersed | |
| Armi | Armi-Chr1:9332713 | Armi3g01694 | Armi-Chr3:47478382 | dispersed | |
| Armi | Armi-Chr1:9332713 | Armi11g01579 | Armi-Chr11:78836337 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Armi1g00468 | . | 17 | 537 | TPS gene family | AT4G16730 | 33.588 | 2.63e-104 | 323.0 | |
| Armi3g00956 | . | 27 | 784 | TPS gene family | AT1G79460 | 55.453 | 0.0 | 850.0 | |
| Armi3g00957 | . | 27 | 778 | TPS gene family | AT1G79460 | 53.15 | 0.0 | 807.0 | |
| Armi3g01694 | . | 4 | 542 | TPS gene family | AT5G23960 | 37.179 | 3.51e-119 | 361.0 | |
| Armi3g02001 | . | 5 | 545 | TPS gene family | AT5G23960 | 35.036 | 2.09e-113 | 346.0 | |
| Armi3g02002 | . | 41 | 444 | TPS gene family | AT5G23960 | 34.383 | 3.37e-76 | 245.0 | |
| Armi3g02003 | . | 467 | 545 | TPS gene family | AT5G23960 | 35.0 | 9.86e-11 | 54.3 | |
| Armi3g02005 | . | 5 | 545 | TPS gene family | AT5G23960 | 35.036 | 2.74e-114 | 348.0 | |
| Armi3g02007 | . | 5 | 545 | TPS gene family | AT5G23960 | 35.036 | 2.74e-114 | 348.0 | |
| Armi3g02008 | . | 467 | 545 | TPS gene family | AT5G23960 | 35.0 | 9.86e-11 | 54.3 | |
| Armi3g02010 | . | 5 | 545 | TPS gene family | AT5G23960 | 35.036 | 2.74e-114 | 348.0 | |
| Armi3g02013 | . | 358 | 489 | TPS gene family | AT1G70080 | 34.091 | 7.58e-27 | 103.0 | |
| Armi3g02014 | . | 467 | 545 | TPS gene family | AT5G23960 | 35.0 | 9.86e-11 | 54.3 | |
| Armi4g00981 | . | 7 | 546 | TPS gene family | AT5G23960 | 42.066 | 4.00e-156 | 456.0 | |
| Armi4g00985 | . | 2 | 546 | TPS gene family | AT5G23960 | 41.865 | 1.08e-156 | 458.0 | |
| Armi5g00625 | . | 397 | 545 | TPS gene family | AT5G23960 | 35.762 | 1.26e-29 | 110.0 | |
| Armi5g00627 | . | 60 | 412 | TPS gene family | AT3G14490 | 35.854 | 3.75e-72 | 234.0 | |
| Armi5g01535 | . | 52 | 594 | TPS gene family | AT3G25820 | 41.953 | 6.76e-146 | 433.0 | |
| Armi5g01538 | . | 52 | 594 | TPS gene family | AT3G25820 | 39.783 | 9.95e-134 | 402.0 | |
| Armi5g02391 | . | 3 | 547 | TPS gene family | AT5G23960 | 37.091 | 2.66e-130 | 390.0 | |
| Armi5g02912 | . | 7 | 547 | TPS gene family | AT5G23960 | 38.858 | 9.57e-139 | 411.0 | |
| Armi5g02913 | . | 7 | 547 | TPS gene family | AT5G23960 | 38.858 | 9.57e-139 | 411.0 | |
| Armi6g00112 | . | 377 | 547 | TPS gene family | AT5G23960 | 39.535 | 2.02e-38 | 135.0 | |
| Armi6g00114 | . | 294 | 547 | TPS gene family | AT5G23960 | 39.216 | 5.80e-58 | 191.0 | |
| Armi9g02038 | . | 4 | 546 | TPS gene family | AT5G23960 | 37.5 | 2.06e-126 | 380.0 | |
| Armi9g02149 | . | 7 | 547 | TPS gene family | AT5G23960 | 37.638 | 2.74e-127 | 382.0 | |
| Armi9g02345 | . | 33 | 798 | TPS gene family | AT1G61120 | 45.178 | 0.0 | 681.0 | |
| Armi9g02350 | . | 6 | 779 | TPS gene family | AT1G61120 | 45.638 | 0.0 | 682.0 | |
| Armi11g00732 | . | 72 | 569 | TPS gene family | AT1G61680 | 43.478 | 4.14e-146 | 430.0 | |
| Armi11g00733 | . | 72 | 569 | TPS gene family | AT1G61680 | 43.478 | 4.14e-146 | 430.0 | |
| Armi11g00734 | . | 33 | 594 | TPS gene family | AT3G25820 | 35.169 | 8.26e-111 | 341.0 | |
| Armi11g00735 | . | 25 | 565 | TPS gene family | AT4G16740 | 35.091 | 9.24e-111 | 340.0 | |
| Armi11g01579 | . | 29 | 515 | TPS gene family | AT4G16730 | 36.327 | 7.69e-109 | 335.0 | |
| Armi12g01494 | . | 256 | 376 | TPS gene family | AT3G14490 | 44.628 | 6.53e-30 | 110.0 | |
| Armi13g01743 | . | 3 | 547 | TPS gene family | AT5G23960 | 40.037 | 1.48e-148 | 436.0 | |
| Armi13g01744 | . | 3 | 547 | TPS gene family | AT5G23960 | 40.037 | 1.65e-148 | 436.0 | |
| Armi13g01745 | . | 3 | 547 | TPS gene family | AT5G23960 | 39.671 | 1.18e-146 | 432.0 | |
| Armi16g01208 | . | 4 | 547 | TPS gene family | AT5G23960 | 38.087 | 1.27e-122 | 369.0 | |
| Armi16g01209 | . | 4 | 547 | TPS gene family | AT5G23960 | 37.838 | 6.27e-126 | 378.0 | |
| Armi16g01667 | . | 50 | 802 | TPS gene family | AT4G02780 | 53.169 | 0.0 | 820.0 | |
| Armi16g01670 | . | 12 | 802 | TPS gene family | AT4G02780 | 47.215 | 0.0 | 736.0 | |
| Armi16g01671 | . | 108 | 802 | TPS gene family | AT4G02780 | 54.482 | 0.0 | 768.0 |