AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00498 ATGGCTTCTTTTGCCACTTCTTCTACCTTCACCGCCATCCCGGCCACCACGACGGCCACCACTACCAAAAGACTGCCAAACTCGCCTTTCTTTTCCACCTCCCACCAACGTTCCAAAAAAATCCATCGCAGCTTCAAAGTCTCATGCAACTTCGCCGATGACAACGAGAAGCGAATCGAATCCGAAAATCTCACACTCCTCGAACACCACAATCTTGACCGGAGGAACTTGCTCTTAGGGCTCGGCGCCGGTGGCCTTTACACCACGGTCAACTTACCGGCGGCCTTAGCCGCCCCTATCACGACGCCTGACATCTCGACATGCAAAGCCTCAATCGATGGTTTCATTAACCTAAAAGATCGCATAAGAACCAATGCATGTTGTCCTCCGGTGCCACCACCTTCAGTAAAATCCGTGAAAAAACATGTCCTACCTAAATCCGAACCGGTCCGGTTAAGACCAGCGGCACATAGAGTCACTCCTGAGTACATTGAAAAGTACCAAAGAGCAATGGCAGCCATGAAAGCTCTCCCAGATGAAGACCCACACAGCTTCGTGCAACAAGCTAAAATCCATTGCGCTTACTGCAATGGTGGTTACTTTCAAGAAGGTTACCCTAATAAAGATCTTCAAGTTCACAACTGCTGGCTCTTCTTTCCTTTCCACCGTTGGTACTTGTATTTCTTCGAGAGAATACTCGGAAAATTGATCGATGATCCTACTTTTGGGTTGCCGTACTGGAACTGGGACAACCCTAGTGGGATGAGTATGCCGGCGTTCTTTGAAGGAAAATATTTCGATCCAAAAACAAGCGAACTAAACTCAGCCTTCGACGCATTTCGAAACGTCGAACATCTTCCACCAGCCATCCTCAACATCGATTTCAACAACATTGATAGTGCTGATTTTACTTGTGTACAACAAATAGGTTCAAACCTGAGTTTAATGTATAAGCAGATGATCGCCAACTCCCCGAACGCAGCAACTTTCTTCGGTGGTGAGTTCAAAGCTGGGGATAATCCTATTTCTATACAGAATTCTAAAGGGCCAATAGAGTCCGGTGTTCATACTGCGGCACACATTTGGGTTGGTAACCCTAGAATGCCGAACAACGAGGACATGGGGAACTTTTACTCGTCGGGATGGGACCCTTTGTTCTACACTCATCATGCAAACGTCGATCGTATGTGGAAAATATGGAAGGACTTGAAGGGACCCGAGTACCCTGATCACAATGAACCCACAGACCCTGATTGGCTCGACGCGTCATACGTGTTCTATGACGAGAACAAAGAGCTTGTACGTGTCTACAACAAAGACTCTGTTCAGATGGAGAATCTACATTACGAATATGAACCTTCCCCACTCCCTTGGCTTAAGAGTCGACCCGTTGGACGTAACAAGAACTCACATGTTGTAGCCAAGTCATTTGGGAATGTGGAGAAAGTGGAGGACATCAAGTTCCCGGTGAAACTTGACAAGATAGTTAAGGTGTTGGTGAAACGGCCAACCATAAATAGAAGCAAAGAGGATAAGAAGAAAGCATATGAGCTATTGTATGTTAATGATATCAAGCTCGATGGTGAGAAGTTTGTCAAGTTTGATGTGTTTGTAAATGACATAGACGATGGTACTCCATGCAGTCCACTTGATAGTGAGTTTGCGGGTAGTTTCTCGCAGTTGGCACATTTTCATGGGCACAAAATGTTGATGTCGAGTGGGGTGACGTTTGGGTTGAATGAGTTGTTGGACGACATACAAGCGGAGAGTGATGAGTATATTTTGGTGACGTTGGTGCCAAGGAATGGGTGCGAAGATGTAACCGTTGGTGTGATCAAGGTTGAGTTGGTTCCGTCAACTGCTTCAGGATGA 1872 46.26 MASFATSSTFTAIPATTTATTTKRLPNSPFFSTSHQRSKKIHRSFKVSCNFADDNEKRIESENLTLLEHHNLDRRNLLLGLGAGGLYTTVNLPAALAAPITTPDISTCKASIDGFINLKDRIRTNACCPPVPPPSVKSVKKHVLPKSEPVRLRPAAHRVTPEYIEKYQRAMAAMKALPDEDPHSFVQQAKIHCAYCNGGYFQEGYPNKDLQVHNCWLFFPFHRWYLYFFERILGKLIDDPTFGLPYWNWDNPSGMSMPAFFEGKYFDPKTSELNSAFDAFRNVEHLPPAILNIDFNNIDSADFTCVQQIGSNLSLMYKQMIANSPNAATFFGGEFKAGDNPISIQNSKGPIESGVHTAAHIWVGNPRMPNNEDMGNFYSSGWDPLFYTHHANVDRMWKIWKDLKGPEYPDHNEPTDPDWLDASYVFYDENKELVRVYNKDSVQMENLHYEYEPSPLPWLKSRPVGRNKNSHVVAKSFGNVEKVEDIKFPVKLDKIVKVLVKRPTINRSKEDKKKAYELLYVNDIKLDGEKFVKFDVFVNDIDDGTPCSPLDSEFAGSFSQLAHFHGHKMLMSSGVTFGLNELLDDIQAESDEYILVTLVPRNGCEDVTVGVIKVELVPSTASG 623
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00498 623 Pfam Common central domain of tyrosinase 183 402 IPR002227 GO:0016491(InterPro)
Armi1g00498 623 PIRSF PPO-plant 1 618 IPR016213 GO:0004097(InterPro)|GO:0046148(InterPro)
Armi1g00498 623 PRINTS Tyrosinase copper-binding domain signature 213 230 IPR002227 GO:0016491(InterPro)
Armi1g00498 623 PRINTS Tyrosinase copper-binding domain signature 382 400 IPR002227 GO:0016491(InterPro)
Armi1g00498 623 PRINTS Tyrosinase copper-binding domain signature 244 249 IPR002227 GO:0016491(InterPro)
Armi1g00498 623 PRINTS Tyrosinase copper-binding domain signature 355 366 IPR002227 GO:0016491(InterPro)
Armi1g00498 623 Gene3D - 98 463 IPR008922 -
Armi1g00498 623 PANTHER TYROSINASE FAMILY MEMBER 73 567 IPR050316 -
Armi1g00498 623 SUPERFAMILY Di-copper centre-containing domain 126 458 IPR008922 -
Armi1g00498 623 ProSitePatterns Tyrosinase CuA-binding region signature. 213 230 IPR002227 GO:0016491(InterPro)
Armi1g00498 623 Pfam Protein of unknown function (DUF-B2219) 488 616 IPR022740 GO:0004097(InterPro)
Armi1g00498 623 Pfam Polyphenol oxidase middle domain 414 463 IPR022739 GO:0004097(InterPro)
Armi1g00498 623 ProSitePatterns Tyrosinase and hemocyanins CuB-binding region signature. 383 394 IPR002227 GO:0016491(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00498 K00422 polyphenol oxidase [EC:1.10.3.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
20249 Armi1g00498 Armi8g02426
20250 Armi1g00498 Armi8g02428
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:10035844 Armi1g00498 Armi-Chr1:10136062 dispersed
Armi Armi-Chr1:10136062 Armi1g00504 Armi-Chr1:10344168 dispersed
Armi Armi-Chr1:10046333 Armi1g00498 Armi-Chr1:10136062 proximal