AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00506 ATGGGGAATAAACTTGGTAGGAGGCGACAGCTAGTGGATGATAAGTATACAAGGCCTCAAGGGTTGTATCAACATAAAGATGTAGATCACAAGAAGCTTCGTAAGCTTATACTTGATTCAAAGCTCGCTCCTTGTTATCCTGGAGACGATGATTGCAGTTGCGATCTTGAAGAATGCCCAATTTGTTTCTTGTATTATCCAAGTCTAAATAGATCAAGATGTTGTACCAAAGGCATTTGTACAGAGTGTTTCCTGCAGATGAAAACACCCAATTCTACTCGCCCCACACAGTGTCCCTTTTGTAAAACATTGAATTACGCTGTGGAGTATAGAGGCGTGAAGACAAAGGAGGAAAAGGGGCAGGAGCAAATTGAAGAACAAAGGGTGATAGAAGCAAAAATAAGAATGAGACAGCAAGAAATTCAAGATGAAGAGGAAAGAATGCTAAAAAGGCAAGAGACGAGCTCGTCAAGCAGGATAATTGAACCAAATGAGGCTGAGTATTTCTCCAGGGCAGTGACATCATCTTCTGAAGGCGAGGAAATTGTTTCTGTTCCACAGCAGGGTGCCACAACAATTAGACATCCTCAACGCTCTAGGGAGACCAGAGATGATGAGTTTGACCTTGATCCTGAGAACATAATGCTTATGGAAGCAATCTGGTTATCATTTCAGGAGGATGGGAAGCGCCAACACCATAGCCCAAATTACGGTGATGCTGCCCAATTAGCAAAATACGCTACAGAAGTTCGTGTTTTGGCATCCATGGCCCCACAGGCTGCTGAATCATCATCTTCAACCTCATCGCCTTCTGGCGGTCTTGCATGTGCTATAGCCGCCCTTGCTGAACGCCAGCAAATGGGAGGAGATCAATCGTCTACTAATTACAACAGTTACAGTGGGAATATATCAACATACAACGTCCAGCATCCAACAGGGTTATCACTTGATAACCATCTGGGAATAAGATCGGAGGGAGGATGGGTGCAAGATTCTTCAGAGATGGCTCAAACGGCATATGGGTATGATAATTCTAACGCAATAGATGATAACGGAAGCAGATACGGGCAACAAGACGCGGATGATGACGAGGAGATGGAGAACGGTTTCGGTGGAACCGTAGTTGTTCCTGAGAGCTTCGAAGAACAGATGATGCTAGCCATGGCGGTTTCGCTGGCAGAGGCTCGAGCTAGGACTAGTACACCAGAGGTTGCGTGGATTTAG 1224 45.1 MGNKLGRRRQLVDDKYTRPQGLYQHKDVDHKKLRKLILDSKLAPCYPGDDDCSCDLEECPICFLYYPSLNRSRCCTKGICTECFLQMKTPNSTRPTQCPFCKTLNYAVEYRGVKTKEEKGQEQIEEQRVIEAKIRMRQQEIQDEEERMLKRQETSSSSRIIEPNEAEYFSRAVTSSSEGEEIVSVPQQGATTIRHPQRSRETRDDEFDLDPENIMLMEAIWLSFQEDGKRQHHSPNYGDAAQLAKYATEVRVLASMAPQAAESSSSTSSPSGGLACAIAALAERQQMGGDQSSTNYNSYSGNISTYNVQHPTGLSLDNHLGIRSEGGWVQDSSEMAQTAYGYDNSNAIDDNGSRYGQQDADDDEEMENGFGGTVVVPESFEEQMMLAMAVSLAEARARTSTPEVAWI 407
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00506 407 ProSiteProfiles Zinc finger RING-type profile. 59 102 IPR001841 -
Armi1g00506 407 MobiDBLite consensus disorder prediction 179 195 - -
Armi1g00506 407 PANTHER PROTEIN SIP5 1 295 IPR039301 GO:0005737(PANTHER)
Armi1g00506 407 MobiDBLite consensus disorder prediction 344 363 - -
Armi1g00506 407 MobiDBLite consensus disorder prediction 179 207 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00506 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
20255 Armi1g00506 Armi7g00420
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:10425465 Armi7g00420 Armi-Chr7:7910212 wgd