AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Armi1g00528 | ATGGAAGACGATCTCCTCTGCCCTCAAGATTCCGATCTCGATCTCAGTTTCACAAGCTCCACCTCCATCGCCACCACCAGTGCCCGCTCCAGTCTAGCTCGTTCCAGTTTATGTCTTAGTTTCAACGATTCCACTCGCATCTCCTCCGCCGCCTCCTCCACCGCCGTACCTAACCTCCACCCGCGCCCTCACCGCAAATCCGATGCCAATTGGTCCGCTATCAGAGCCGCCACTAATCTCTCCTCCGACGGCACTCTCCACCTCCGCCACCTCAAGCTCGTTCGCCATGTCGGATCTGGAAATCTCGGCCGCGTGTTCCTTTGCCGTCTGAGAGATTACGATCACGCAAGTTTTGCTCTCAAAGTTGTTGATAACAACTCACTCACGTCGAAGAAGCTGTCGCATGTGCAAACGGAGGCTCGGATCCTGTCGTCGCTGGACCACCCGTTCCTCCCTACGCTCTACGCTCATTTGGAAGTCTCTCATTACACTTGCTTCCTGATCGATTTCTGTCCTAACGGAGACCTCCATTCCTTGATCCGTAAGCAACCTAATTACCGATTACCGATTGATTCCGTTAGGTTCTTCGCCGCCGAGGTTTTGGTAGCGCTCGAATATCTCCACTCGCTCGGGATCGTGTACCGTGATCTGAAGCCGGAAAACATTTTGATCCGTGAAGACGGTCACATTATGTTGTCAGATTTCGATTTATGCTTCAACGCCGACGTCGTTCCAAAGCTCGATAACCGGATCGAAGGCCGGACCTGTACGAAACAATATCGTAGCTATTGCTGCTATTACGGCGGCGATAGGCGGAGACGTACGGAAGAAAAAACGATAACGGAGTTTGTAGCGGAGCCGACGACGGCTTTCTCGAGATCGTGCGTCGGAACTCACGAGTATTTGGCTCCGGAGTTGATCACCGGCAACGGTCACGGCAGCGGCGTCGACTGGTGGGCGTTCGGAGTGTTGATTTACGAATTGTTGTACGGACGGACGCCGTTTAGAGGAGGATGTAAAGAGTCAACCCTGCGCAATATAGCATCGAGCAGTGAAGTTAGGTTTGATGAAGAGAGCACAAGAGGTATGGCGCAGGCTAAGGATTTGATAGAGAAGTTGCTGGTAAAAGATCCACGGGGGCGGCTAGGATGCGCTAGGGGTGCGACGGATATTAAACGGCACTCGTTCTTCGACGGCATTAAGTGGCCGTTGATCCGGATGTACCGGCCGCCGGACGTGCGGGGGATGGCGGTGAAGAGGAATAGTAGGGCGCACGTTATTAACGTGAGCGGGTGGTCATCGTCCCATAAGAAAAGGCGTTGGTTATGGAAGGGGCTTAGTTGTATATTTCTGAAAAATAAGGGGTCTAAACGTAACTTGAATTCCAACCATAATTATTACCATTACAAAAAGTAG | 1416 | 52.12 | MEDDLLCPQDSDLDLSFTSSTSIATTSARSSLARSSLCLSFNDSTRISSAASSTAVPNLHPRPHRKSDANWSAIRAATNLSSDGTLHLRHLKLVRHVGSGNLGRVFLCRLRDYDHASFALKVVDNNSLTSKKLSHVQTEARILSSLDHPFLPTLYAHLEVSHYTCFLIDFCPNGDLHSLIRKQPNYRLPIDSVRFFAAEVLVALEYLHSLGIVYRDLKPENILIREDGHIMLSDFDLCFNADVVPKLDNRIEGRTCTKQYRSYCCYYGGDRRRRTEEKTITEFVAEPTTAFSRSCVGTHEYLAPELITGNGHGSGVDWWAFGVLIYELLYGRTPFRGGCKESTLRNIASSSEVRFDEESTRGMAQAKDLIEKLLVKDPRGRLGCARGATDIKRHSFFDGIKWPLIRMYRPPDVRGMAVKRNSRAHVINVSGWSSSHKKRRWLWKGLSCIFLKNKGSKRNLNSNHNYYHYKK | 471 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Armi1g00528 | 471 | Gene3D | Transferase(Phosphotransferase) domain 1 | 175 | 241 | - | - | |
| Armi1g00528 | 471 | SUPERFAMILY | Protein kinase-like (PK-like) | 75 | 425 | IPR011009 | - | |
| Armi1g00528 | 471 | CDD | STKc-phototropin-like | 89 | 411 | - | - | |
| Armi1g00528 | 471 | ProSiteProfiles | Protein kinase domain profile. | 91 | 397 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Armi1g00528 | 471 | Gene3D | Transferase(Phosphotransferase) domain 1 | 292 | 406 | - | - | |
| Armi1g00528 | 471 | Pfam | Protein kinase domain | 292 | 397 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Armi1g00528 | 471 | Pfam | Protein kinase domain | 93 | 260 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Armi1g00528 | 471 | Gene3D | Phosphorylase Kinase; domain 1 | 90 | 174 | - | - | |
| Armi1g00528 | 471 | SMART | serkin-6 | 91 | 397 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Armi1g00528 | 471 | FunFam | Serine-threonine-protein kinase OXI1 | 175 | 242 | - | - | |
| Armi1g00528 | 471 | FunFam | Serine-threonine-protein kinase OXI1 | 290 | 415 | - | - | |
| Armi1g00528 | 471 | PANTHER | FLIPPASE KINASE 1-RELATED | 35 | 418 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
| Armi1g00528 | 471 | ProSitePatterns | Serine-Threonine protein kinases active-site signature. | 212 | 224 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Armi1g00528 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Armi | Armi-Chr1:11233888 | Armi9g02646 | Armi-Chr9:91140167 | dispersed | |
| Armi | Armi-Chr1:11233888 | Armi17g01036 | Armi-Chr17:47467600 | wgd | |
| Armi | Armi-Chr1:11233888 | Armi7g00396 | Armi-Chr7:7400457 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Armi1g00210 | . | 121 | 586 | AGC Kinase gene family | AT5G47750 | 78.085 | 0.0 | 753.0 | |
| Armi1g00528 | . | 1 | 471 | AGC Kinase gene family | AT1G53700 | 60.46 | 0.0 | 546.0 | |
| Armi1g03717 | ACH | 135 | 233 | AGC Kinase gene family | AT5G58140 | 44.444 | 4.17e-21 | 96.3 | |
| Armi1g04586 | . | 5 | 373 | AGC Kinase gene family | AT3G25250 | 60.686 | 2.73e-159 | 453.0 | |
| Armi1g04703 | . | 1 | 517 | AGC Kinase gene family | AT2G20470 | 78.998 | 0.0 | 845.0 | |
| Armi2g00862 | . | 28 | 459 | AGC Kinase gene family | AT3G08720 | 57.456 | 0.0 | 514.0 | |
| Armi2g01591 | . | 11 | 504 | AGC Kinase gene family | AT5G09890 | 76.923 | 0.0 | 815.0 | |
| Armi2g02124 | . | 111 | 555 | AGC Kinase gene family | AT1G79250 | 71.125 | 0.0 | 672.0 | |
| Armi2g02502 | . | 4 | 486 | AGC Kinase gene family | AT3G10540 | 78.719 | 0.0 | 793.0 | |
| Armi2g03827 | . | 1 | 1288 | AGC Kinase gene family | AT3G17850 | 64.227 | 0.0 | 1561.0 | |
| Armi3g01989 | . | 1 | 1294 | AGC Kinase gene family | AT3G17850 | 64.562 | 0.0 | 1592.0 | |
| Armi3g02870 | . | 1 | 459 | AGC Kinase gene family | AT3G08720 | 69.247 | 0.0 | 629.0 | |
| Armi3g03388 | . | 4 | 486 | AGC Kinase gene family | AT3G10540 | 76.892 | 0.0 | 786.0 | |
| Armi3g04437 | . | 119 | 491 | AGC Kinase gene family | AT5G58140 | 32.984 | 6.14e-59 | 204.0 | |
| Armi4g03013 | . | 70 | 499 | AGC Kinase gene family | AT5G40030 | 77.5 | 0.0 | 703.0 | |
| Armi4g03086 | . | 98 | 586 | AGC Kinase gene family | AT5G47750 | 67.339 | 0.0 | 667.0 | |
| Armi4g03222 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 64.009 | 0.0 | 553.0 | |
| Armi4g03225 | . | 463 | 901 | AGC Kinase gene family | AT3G52890 | 64.253 | 0.0 | 590.0 | |
| Armi4g03361 | . | 16 | 395 | AGC Kinase gene family | AT3G20830 | 58.639 | 1.04e-155 | 443.0 | |
| Armi4g03700 | . | 71 | 421 | AGC Kinase gene family | AT3G44610 | 60.684 | 1.76e-155 | 446.0 | |
| Armi4g04440 | . | 989 | 1159 | AGC Kinase gene family | AT5G62310 | 69.143 | 2.81e-79 | 254.0 | |
| Armi5g02518 | . | 134 | 234 | AGC Kinase gene family | AT5G58140 | 42.727 | 1.02e-19 | 92.0 | |
| Armi6g00315 | . | 13 | 391 | AGC Kinase gene family | AT1G51170 | 56.378 | 1.75e-150 | 430.0 | |
| Armi6g00477 | . | 3 | 451 | AGC Kinase gene family | AT3G44610 | 61.915 | 0.0 | 528.0 | |
| Armi6g02610 | . | 1 | 934 | AGC Kinase gene family | AT3G52890 | 47.585 | 0.0 | 748.0 | |
| Armi7g00396 | . | 1 | 471 | AGC Kinase gene family | AT1G53700 | 59.878 | 0.0 | 525.0 | |
| Armi7g01499 | . | 4 | 518 | AGC Kinase gene family | AT4G33080 | 76.641 | 0.0 | 818.0 | |
| Armi7g02132 | . | 4 | 525 | AGC Kinase gene family | AT2G26700 | 57.439 | 0.0 | 568.0 | |
| Armi7g02226 | . | 40 | 263 | AGC Kinase gene family | AT5G04510 | 23.013 | 5.33e-11 | 65.1 | |
| Armi8g00627 | ACH | 124 | 233 | AGC Kinase gene family | AT5G58140 | 42.017 | 3.91e-21 | 96.3 | |
| Armi9g00255 | . | 1 | 934 | AGC Kinase gene family | AT3G52890 | 48.891 | 0.0 | 759.0 | |
| Armi9g02646 | . | 86 | 586 | AGC Kinase gene family | AT5G47750 | 69.922 | 0.0 | 664.0 | |
| Armi9g02656 | . | 135 | 453 | AGC Kinase gene family | AT3G08720 | 33.951 | 5.88e-47 | 174.0 | |
| Armi10g01420 | . | 1 | 538 | AGC Kinase gene family | AT4G14350 | 82.189 | 0.0 | 904.0 | |
| Armi10g01881 | . | 66 | 765 | AGC Kinase gene family | AT2G44830 | 66.154 | 0.0 | 880.0 | |
| Armi11g00998 | . | 92 | 586 | AGC Kinase gene family | AT5G47750 | 82.164 | 0.0 | 826.0 | |
| Armi14g00931 | . | 1 | 991 | AGC Kinase gene family | AT1G45160 | 51.845 | 0.0 | 958.0 | |
| Armi14g01623 | . | 89 | 586 | AGC Kinase gene family | AT5G47750 | 78.77 | 0.0 | 797.0 | |
| Armi15g00670 | . | 86 | 765 | AGC Kinase gene family | AT2G44830 | 67.004 | 0.0 | 876.0 | |
| Armi15g01048 | . | 4 | 438 | AGC Kinase gene family | AT2G34650 | 60.851 | 0.0 | 538.0 | |
| Armi16g01407 | . | 5 | 386 | AGC Kinase gene family | AT3G25250 | 55.216 | 4.43e-149 | 427.0 | |
| Armi16g01548 | . | 37 | 540 | AGC Kinase gene family | AT4G14350 | 77.953 | 0.0 | 837.0 | |
| Armi17g00054 | . | 1 | 468 | AGC Kinase gene family | AT3G08720 | 68.499 | 0.0 | 666.0 | |
| Armi17g01036 | . | 18 | 996 | AGC Kinase gene family | AT3G45780 | 68.671 | 0.0 | 1389.0 | |
| Armi18g00099 | . | 71 | 578 | AGC Kinase gene family | AT3G27580 | 67.619 | 0.0 | 687.0 | |
| Armi18g01236 | . | 49 | 910 | AGC Kinase gene family | AT5G58140 | 70.921 | 0.0 | 1280.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Armi | Pkinase | 5.7e-34 | CL0016 | PK | AGC_RSK-2 |