AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00642 ATGGCTCCAGCTGCAGCAGTGGATGGTTCCGATAAGATCAAACCTAGAGATGTATGTATTGTTGGTGTTGCGCGCACACCACTTGGTGGGTTTCTTGGTTCTCTTTCAACTTTACCGGCCACCAAACTTGGGTCCATAGCAATTGAATGTGCTCTAAAAAGGGCAAATGTTGATCCATCACTTGTAGAAGAAGTTTATTTTGGAAATGTTCTTGGTGCCAATTTGGGGCAAGGTCCGGCCAGACAAGCAGCGTTAGGTGCAGGAATCCCTAATACAGTGGTCTCTACATCTGTAAACAAAGTTTGTGCATCAGGGATGAAAGCAACCATGTTGGCGGCACAGAGTATCCAATTGGGTCAAAATGATATAGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGTCCCCAAATATATTGCAGAAGCAAGGAAGGGATCTAAGTTTGGACATGATACTCTTGTTGATGGGATTCTGAAAGACGGGTTGTGGGATGTTTTCAACGATTTTAAGATGGGGAACTGTGCTGAAATATGTGCAGATACACATGGCATAACAAGAGAACAACAGGATGACTATGCCATTCAAAGCTTTGAGCGTGGTCTCGCTGCCCGAGATAGTGGTGCCTTTGCATGGGAAATTGCTCCTGTTGAAGTTCCAGGCCCAAGAGGAAGACCATCAACAATTGTTGACAAAGATGATGATTTGGCAAAGTTTGATGCTGCAAAGTTGAGGAAGCTGCGTCCAGCTTTCAAGGAGAATGGCGGCAGTGTTACTGCCGGCAATTCCTCTGGTATAAATGATGGTGCTGCTGCACTTGTCTTGGTTAGTGGGGAGAAGGCACTTGAGCTTGGGTTGCATGTGATTGCAAAGGTTTCCGGATATGCTGATGCTGAACAGGCACCTGAGTTATTTACAACCACCCCAGCCCTTGCTATACCGAAGGCTATTTCAAGAGCTGGATTGGACGCTTCTCAAATAGATTTCTATGAAATCAATGAAGCATTTGCTGTTGTGGCTCTTGCAAACCGGAAACTGCTTGGTTTGGATTCTGCAAAGCTTAATGTACATGGTGGTGGTGTGTCATTGGGACATCCTCTAGGTTGCAGTGGTGCCCGTATCTTGGTCACTCTTTTGGGGGTTTTGAAGCAGAAAGGCGGCAAATATGGAGCAGCAGGTGTGTGCAATGGAGGTGGAGGTGCGTCAGCGTTTGTCCTAGAACTTGTTTGA 1227 46.05 MAPAAAVDGSDKIKPRDVCIVGVARTPLGGFLGSLSTLPATKLGSIAIECALKRANVDPSLVEEVYFGNVLGANLGQGPARQAALGAGIPNTVVSTSVNKVCASGMKATMLAAQSIQLGQNDIVVAGGMESMSNVPKYIAEARKGSKFGHDTLVDGILKDGLWDVFNDFKMGNCAEICADTHGITREQQDDYAIQSFERGLAARDSGAFAWEIAPVEVPGPRGRPSTIVDKDDDLAKFDAAKLRKLRPAFKENGGSVTAGNSSGINDGAAALVLVSGEKALELGLHVIAKVSGYADAEQAPELFTTTPALAIPKAISRAGLDASQIDFYEINEAFAVVALANRKLLGLDSAKLNVHGGGVSLGHPLGCSGARILVTLLGVLKQKGGKYGAAGVCNGGGGASAFVLELV 408
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00642 408 ProSitePatterns Thiolases active site. 389 402 IPR020610 GO:0016747(InterPro)
Armi1g00642 408 Gene3D - 14 407 IPR016039 GO:0016746(InterPro)
Armi1g00642 408 ProSitePatterns Thiolases signature 2. 354 370 IPR020613 GO:0016747(InterPro)
Armi1g00642 408 PIRSF Ac-CoA-Ac-transf 12 408 IPR002155 GO:0016747(InterPro)
Armi1g00642 408 Pfam Thiolase, C-terminal domain 286 406 IPR020617 GO:0016747(InterPro)
Armi1g00642 408 Pfam Thiolase, N-terminal domain 18 277 IPR020616 GO:0016747(InterPro)
Armi1g00642 408 SUPERFAMILY Thiolase-like 17 285 IPR016039 GO:0016746(InterPro)
Armi1g00642 408 SUPERFAMILY Thiolase-like 288 407 IPR016039 GO:0016746(InterPro)
Armi1g00642 408 CDD thiolase 20 406 IPR002155 GO:0016747(InterPro)
Armi1g00642 408 PANTHER ACETYL-COA C-ACYLTRANSFERASE 17 407 - GO:0003985(PANTHER)|GO:0005739(PANTHER)|GO:0006635(PANTHER)
Armi1g00642 408 NCBIfam acetyl-CoA C-acyltransferase 20 406 IPR002155 GO:0016747(InterPro)
Armi1g00642 408 FunFam acetyl-CoA acetyltransferase, mitochondrial 13 408 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00642 K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
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Event-related genes

Select Gene_1 Gene_2 Event_name
20272 Armi1g00642 Armi7g00374
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr15:77493530 Armi1g00642 Armi-Chr1:15090670 dispersed
Armi Armi-Chr1:15090670 Armi6g00063 Armi-Chr6:1352037 dispersed
Armi Armi-Chr1:15090670 Armi7g00374 Armi-Chr7:6913421 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Armi1g00642 ACH 1 405 AACT gene family AT5G47720 76.471 0.0 649.0
Armi7g00374 ACH 1 405 AACT gene family AT5G47720 76.225 0.0 650.0
Armi15g01666 . 5 405 AACT gene family AT5G47720 78.304 0.0 656.0