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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00644 ATGGTAACAAACGTGGAACATTCGTCAACGGTTTCAGCAAATGAAGTTGATCATGTTGATATGCTAAATGCCTCATATGATGCTTATGAAGGAGTTATTATCAACATAAAAGAGAACATGGATGAAAATGTCTTTACAACTCTACTTCAAACATCAATATCCCAATGGAGGCAGCAGGGAAAGAAGGGAGTTTGGCTTAAACTGTCTCTTGAACTTGTGAATCTTGTTAAGCCTGCAGTGAAGGAAGGATTTTGGTATCATCACGCGGAACCAACGTACTTGATGCTCGTCTATTGGATCCCTAAAACTAATTGTACCCTCCCGGAAAACGCTTCCCATCGAGTTGGTGTTGCTGCTTTTGCCATGAACACCAAGGGGGAGGTTCTTGTAGTGCAAGAGAAAAATGGAACCTTCAAAGGCACGGGAGTGTGGAAATTACCAACCGGCGTTGTTGAGGAGGGTGAAGATATATGTACAGCTGCAATAAGGGAAGTGAAAGAAGAGGCTGGAATTGATACAGAATTTGTTGAAGTCCTTGCATTCAGGCAAAGCCACAAGTCATTCTTCAGCAAGTCTGATCTAATGTTTGTGTGTATGCTAAAACCAACATCTCATGATGTGGAAAAGCAAGATTCAGAGATTGAAGCAGCTCAGTGGATGCCAGTTGAAGAATATGTCAATCAGCCCTTTGTAAAGAAGCACAAATCCTTTGATTACATTGCTAAGATATGCATGGCAAAGAAAGATAACAAATTTGTTGGGTTCTCTGCATTGTCTACAGCAACTGCTACATCTGCCAAGAAGAGCTATTTGTATTCCAATTATCAACAACACTTGTCTGATTCTTAA 849 40.64 MVTNVEHSSTVSANEVDHVDMLNASYDAYEGVIINIKENMDENVFTTLLQTSISQWRQQGKKGVWLKLSLELVNLVKPAVKEGFWYHHAEPTYLMLVYWIPKTNCTLPENASHRVGVAAFAMNTKGEVLVVQEKNGTFKGTGVWKLPTGVVEEGEDICTAAIREVKEEAGIDTEFVEVLAFRQSHKSFFSKSDLMFVCMLKPTSHDVEKQDSEIEAAQWMPVEEYVNQPFVKKHKSFDYIAKICMAKKDNKFVGFSALSTATATSAKKSYLYSNYQQHLSDS 282
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00644 282 Gene3D - 19 104 - -
Armi1g00644 282 ProSitePatterns Nudix box signature. 149 170 IPR020084 GO:0016787(InterPro)
Armi1g00644 282 Pfam NUDIX domain 113 236 IPR000086 -
Armi1g00644 282 CDD Nudix-Hydrolase-12 113 244 - -
Armi1g00644 282 FunFam Nudix hydrolase 8 114 252 - -
Armi1g00644 282 SUPERFAMILY Nudix 80 244 IPR015797 -
Armi1g00644 282 PANTHER NUDIX HYDROLASE RELATED 8 277 IPR003293 GO:0035529(PANTHER)|GO:0047631(PANTHER)|GO:0051287(PANTHER)
Armi1g00644 282 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 110 128 IPR003293 -
Armi1g00644 282 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 198 222 IPR003293 -
Armi1g00644 282 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 72 90 IPR003293 -
Armi1g00644 282 ProSiteProfiles Nudix hydrolase domain profile. 112 244 IPR000086 -
Armi1g00644 282 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 114 253 - -
Armi1g00644 282 FunFam nudix hydrolase 2 19 105 - -
Armi1g00644 282 Pfam Nudix hydrolase domain 22 100 IPR040618 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00644 K26956 ADP-ribose/NAD+ diphosphatase [EC:3.6.1.13 3.6.1.22]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr14:77418625 Armi1g00644 Armi-Chr1:15125435 dispersed
Armi Armi-Chr1:15125435 Armi5g00004 Armi-Chr5:220660 dispersed
Armi Armi-Chr1:15125435 Armi9g02642 Armi-Chr9:91016003 transposed