AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Armi1g00652 | ATGTCATCAAAATCAACTAGCAGAACTCATTGTTCAAGAGGCAGTTCATCAAGATTGAAACGAGATGCTCGTGTGGTTTCACAAACCCCAATTGATGCTAAACTTCATGTTGATTTTGAAGAATCTGAAAGACTCTTTGATTACTCAACTTCAATTGATGTCAATGCTTCAACTTCAACTAGCAATATTGTTCCATCTTCAACTGTTTCAGCTTATCTTCAAAAGATGCAAAGAGGTAATCAAATCCAACCTTTTGGTTGCATGATCACCATTGATGATCAAACTTTAAATGTATTAGCTTACAGTGAAAACACCCTTGAGATGCTTGATTTATCCCCTCATGCTGTTCCAAGCATTGAGCAACAAGAAGCTTTAACTTTCGGTACCGATATCCGTACGCTTTTTCGATCATCGAGCGCGTCCGCTCTTCAAAAAGCCGCGAATTTCGCGGAGGTTAATTTACTGAATCCGATCTTGGTTCATTGCCGGAGTTCGGGTAAGCCGTTTTACGCGATTTTACATAGAAATGATGTTGGTTTGGTTATAGATTTGGAGCCCGTGAATCCCGCGGACGTCCCCGTAACGGCTGCCGGAGCTTTAAAGTCGTATAAGCTCGCGGCTAAATCGATTTCGAGGTTACAATCTTTGCAAAGTGGGAATATATCTCGAATGTGTGACGTGGTGGTTCGTGAAGTGAGTGAGTTAACGGGTTATGATCGGGTTATGGTGTATAAGTTTCATGAAGATGAACACGGTGAGGTGATCGCCGAGTGTCGTAAGCCTGAGCTCGAGCCGTATCTCGGCTTCCATTATCCGGCTACCGATATCCCACAAGCTTCAAGATTTCTTTTTATGAAGAACAAAGTTAGGATGATTTGTGATTGTAATGCTGCACCTGTGAAAGTGATCCAATCCAAGAACTTGGCTCAGCCGTTGAGTCTTTCCGGCTCGGCTTTACGAGCTCCCCACGGATGTCACGCGCAATACATGGCGAATATGGGCTCGATTGCATCGCTTGTGATGTCTGTAACGATCAACAATGGCGATGATGACGATGATGATGATGATGATAACGAGTCTGAAAGTGGGATCGATCAGAAACATAAGGGTAAACGGTTATGGGGTTTAGTCGTTTGCCATCATTCAACTGCTCGATTCGTACCATTTCCTTTGAGGTACGCGTGCGAGTTCTTGATTCAAGTGTTCAGCGTTCAAATCAACAAAGAAGTTGAGTTAACCGCTCAACTACGAGAAAAACACATTTTGAAAACCCAAACCGTACTCTGCGATATGCTTCTGAGAGATGCACCGATCGGGATTTTCACGCAATCGCCTAACGTGATGGATCTCGTTACGTGTGACGGAGCCGCGTTATACTACAAAAACAAGTTTTGGTTGCTTGGAATCACCCCAACCGAAGCCCAAATCCGAGATATCGCGAATTGGCTTCTCGAAGAACATTTAGGGAGTACCGGGTTAAGCACAGATAGTCTCATGGATGCTGGATACCCAAATGCATCTGTTCTCGGAAAAGCGGTTTGCGGAATGGCTGCTGTCAAGATTACCTCGAAAGATTTCCTGTTTTGGTTTCGGTCCCATACCGCGAAGGAAGTGAAATGGGGCGGGGCCAAACACGATCCAGAAGATAAAGACGACGGAAGAAAGATGCATCCGAGGTCATCTTTCAAGGCGTTTTTGGAGGTGGTTAAGAATCGGAGTTTGCCGTGGGAAGATGTGGAGATGGATGCGATCCATTCGTTACAGTTGATATTGAGAGGTTCTTTGCAAGATGATGATGAAGAGACGGGTGACGATGATAAGAAGATCGTGAGTGTTCCGGCTGTTGATACGAGCATACAAAGGGTTGATGAGCTGCGTGTCGTGGCTAATGAAATGGTTCGGCTGATTGAGACGGCTTCGGTACCTATATTTGCGGTTGATGGCAATGGGAATATCAGTGGTTGGAATGATAAAATAGCTGAGCTTACTGGATTGCCTTTGGAGCAAGCTGTTGGTGTCCCGTTAGTCGAGATGGTTACCGATGATTCGGTTGATGAAGTTAAAGTTATGGTGTCCTCTGCCTTAGAAGGCATCGAGGAGAAAAACGTTGAAATCAACCTCAAATGTGTCGATCGTCAAGAAACAAATGATCACATTACCCTTGTTACAAATGCTTGTTGTAGCCGTGATCTGAATGAAACCATCGTAGGGGTATGCTTCGTGGGACAAGATCTAACGGCTAAAAAGTTAATCATGGACAAATATACGAAAGTCAAAGGCGATTACGCTAGTATCGTGCGTAGCCCGTGTGCGCTTATTCCGCCTATTTTTATGATGGACGAGTATGGCAAATGCTTGGAATGGAACGACGCCATGCAAAAATTAACCGGTCTGCGAAGGGAAGAAGCCAAGAACCGAATGCTTCTTGGTGAAGTTTTCACCGTTGGTAATTTCGGTTGTCAGGTCAAAGGCGAAGATACTTTAACCAGGCTTAGAATACTACTAAATGAGGTGCTTTCAGGCTTGGATGCAGATAAGATGATGTTCGGTTTCTTTGACCAAAACGGTAAGTATGTCGAAGCGTTACTTTCCGCTAACAAAAGGGTCGACGGAGACGGAAATATTACGGGGGTTTTGTGCTTTTTACACATAACAAGCCCCGAGCTTCAACACGCGATGATGGTGCAACAAATGTCCGAGCAGGCTGCGTTTAATAGCCTCACGAAGGTGTCTTATTTGCGGCATGAGCTCAAGAGTAGTTTAAACGGGATCAAATGTATCGAGGATTTGATGGAATCATCGGAATTGGGCCGAGAGCAGAGACATATTCTGCGTAAGAGCCATTTGTGTCGAGAACAATTAGCGCAGATCGTCAACGATGCTGATATCGAAAGCATCGAGGAATGTTATATGGAAATGAAATGTGCCGAGTTCAAACTCGGTGAGTCATTGGAGGTGGTTTTGAATCAAGTGACGAGTCTGAGCCGTGAGCAGAAGGTGGAAGTCGTGTATGATGCACCCGATCAACTGTTATCGTTGTATGTATTTGGTGACAATTTGAGGCTTCAACAAGTCCTTTCGGATTTCTTGTCGAGTGCTCTCAACTTCACTCCGGCAATCGAAGGATCTTCGGTTCTTTTTCGAGTAACTCACACAATGGAACACATCGGAGCCAAGATACAAGTCGCCCATCTTGAATTCAGGATTACCCATCCGGCACCGGGGATCCCGGAGAAGTTGATTCAGGATATGTTTCACCACAACCGAAGTGCCTCGAGAGAAGGGCTTGGACTCTACATCAGCCAAAAGCTCGTTAAGATCATGAACGGAACTGTACAGTATCTTAGGGAGGCCGAGAGAGCATCTTTCATCGTTTTGATTGAGCTTCCGTTGGCACCATCATTGACTTCCGACAAAAAACGATCGAAAAGAATCTGA | 3438 | 44.82 | MSSKSTSRTHCSRGSSSRLKRDARVVSQTPIDAKLHVDFEESERLFDYSTSIDVNASTSTSNIVPSSTVSAYLQKMQRGNQIQPFGCMITIDDQTLNVLAYSENTLEMLDLSPHAVPSIEQQEALTFGTDIRTLFRSSSASALQKAANFAEVNLLNPILVHCRSSGKPFYAILHRNDVGLVIDLEPVNPADVPVTAAGALKSYKLAAKSISRLQSLQSGNISRMCDVVVREVSELTGYDRVMVYKFHEDEHGEVIAECRKPELEPYLGFHYPATDIPQASRFLFMKNKVRMICDCNAAPVKVIQSKNLAQPLSLSGSALRAPHGCHAQYMANMGSIASLVMSVTINNGDDDDDDDDDNESESGIDQKHKGKRLWGLVVCHHSTARFVPFPLRYACEFLIQVFSVQINKEVELTAQLREKHILKTQTVLCDMLLRDAPIGIFTQSPNVMDLVTCDGAALYYKNKFWLLGITPTEAQIRDIANWLLEEHLGSTGLSTDSLMDAGYPNASVLGKAVCGMAAVKITSKDFLFWFRSHTAKEVKWGGAKHDPEDKDDGRKMHPRSSFKAFLEVVKNRSLPWEDVEMDAIHSLQLILRGSLQDDDEETGDDDKKIVSVPAVDTSIQRVDELRVVANEMVRLIETASVPIFAVDGNGNISGWNDKIAELTGLPLEQAVGVPLVEMVTDDSVDEVKVMVSSALEGIEEKNVEINLKCVDRQETNDHITLVTNACCSRDLNETIVGVCFVGQDLTAKKLIMDKYTKVKGDYASIVRSPCALIPPIFMMDEYGKCLEWNDAMQKLTGLRREEAKNRMLLGEVFTVGNFGCQVKGEDTLTRLRILLNEVLSGLDADKMMFGFFDQNGKYVEALLSANKRVDGDGNITGVLCFLHITSPELQHAMMVQQMSEQAAFNSLTKVSYLRHELKSSLNGIKCIEDLMESSELGREQRHILRKSHLCREQLAQIVNDADIESIEECYMEMKCAEFKLGESLEVVLNQVTSLSREQKVEVVYDAPDQLLSLYVFGDNLRLQQVLSDFLSSALNFTPAIEGSSVLFRVTHTMEHIGAKIQVAHLEFRITHPAPGIPEKLIQDMFHHNRSASREGLGLYISQKLVKIMNGTVQYLREAERASFIVLIELPLAPSLTSDKKRSKRI | 1145 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Armi1g00652 | 1145 | Gene3D | - | 970 | 1133 | IPR036890 | - | |
| Armi1g00652 | 1145 | PIRSF | Phytochrome-conventional | 2 | 1141 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| Armi1g00652 | 1145 | Pfam | PAS fold | 71 | 187 | IPR013654 | GO:0006355(InterPro) | |
| Armi1g00652 | 1145 | Pfam | Phytochrome region | 423 | 597 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Armi1g00652 | 1145 | PANTHER | OS08G0260000 PROTEIN | 1 | 1003 | - | - | |
| Armi1g00652 | 1145 | CDD | PAS | 772 | 883 | IPR000014 | - | |
| Armi1g00652 | 1145 | SMART | gaf-1 | 220 | 420 | IPR003018 | GO:0005515(InterPro) | |
| Armi1g00652 | 1145 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 76 | 189 | IPR035965 | - | |
| Armi1g00652 | 1145 | PRINTS | Phytochrome signature | 723 | 740 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Armi1g00652 | 1145 | PRINTS | Phytochrome signature | 440 | 460 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Armi1g00652 | 1145 | PRINTS | Phytochrome signature | 650 | 665 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Armi1g00652 | 1145 | PRINTS | Phytochrome signature | 320 | 341 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Armi1g00652 | 1145 | PRINTS | Phytochrome signature | 631 | 647 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Armi1g00652 | 1145 | PRINTS | Phytochrome signature | 525 | 544 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Armi1g00652 | 1145 | PRINTS | Phytochrome signature | 235 | 254 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Armi1g00652 | 1145 | PRINTS | Phytochrome signature | 558 | 576 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Armi1g00652 | 1145 | PRINTS | Phytochrome signature | 135 | 157 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Armi1g00652 | 1145 | PRINTS | Phytochrome signature | 743 | 763 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Armi1g00652 | 1145 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 220 | 400 | IPR016132 | - | |
| Armi1g00652 | 1145 | ProSiteProfiles | PAS repeat profile. | 758 | 813 | IPR000014 | - | |
| Armi1g00652 | 1145 | Gene3D | - | 415 | 588 | IPR043150 | - | |
| Armi1g00652 | 1145 | SMART | HKATPase-4 | 1017 | 1133 | IPR003594 | - | |
| Armi1g00652 | 1145 | Gene3D | PAS domain | 76 | 323 | - | - | |
| Armi1g00652 | 1145 | SUPERFAMILY | GAF domain-like | 418 | 596 | - | - | |
| Armi1g00652 | 1145 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 619 | 741 | IPR035965 | - | |
| Armi1g00652 | 1145 | Pfam | GAF domain | 222 | 409 | IPR003018 | GO:0005515(InterPro) | |
| Armi1g00652 | 1145 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 775 | 880 | IPR035965 | - | |
| Armi1g00652 | 1145 | MobiDBLite | consensus disorder prediction | 347 | 366 | - | - | |
| Armi1g00652 | 1145 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1017 | 1131 | IPR003594 | - | |
| Armi1g00652 | 1145 | CDD | HisKA | 910 | 960 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Armi1g00652 | 1145 | ProSiteProfiles | PAS repeat profile. | 628 | 698 | IPR000014 | - | |
| Armi1g00652 | 1145 | Gene3D | - | 887 | 967 | - | - | |
| Armi1g00652 | 1145 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 320 | 329 | IPR013516 | - | |
| Armi1g00652 | 1145 | Gene3D | - | 201 | 571 | IPR029016 | - | |
| Armi1g00652 | 1145 | NCBIfam | PAS domain S-box protein | 635 | 749 | IPR000014 | - | |
| Armi1g00652 | 1145 | NCBIfam | PAS domain S-box protein | 775 | 882 | IPR000014 | - | |
| Armi1g00652 | 1145 | SMART | pas-2 | 630 | 696 | IPR000014 | - | |
| Armi1g00652 | 1145 | SMART | pas-2 | 760 | 829 | IPR000014 | - | |
| Armi1g00652 | 1145 | FunFam | Phytochrome | 970 | 1131 | - | - | |
| Armi1g00652 | 1145 | Gene3D | PAS domain | 618 | 759 | - | - | |
| Armi1g00652 | 1145 | FunFam | Phytochrome | 415 | 547 | - | - | |
| Armi1g00652 | 1145 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Armi1g00652 | 1145 | CDD | HATPase-Phy-like | 1016 | 1129 | IPR044767 | - | |
| Armi1g00652 | 1145 | ProSiteProfiles | Histidine kinase domain profile. | 912 | 1133 | IPR005467 | - | |
| Armi1g00652 | 1145 | SUPERFAMILY | GAF domain-like | 200 | 407 | - | - | |
| Armi1g00652 | 1145 | SUPERFAMILY | ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase | 979 | 1130 | IPR036890 | - | |
| Armi1g00652 | 1145 | Gene3D | PAS domain | 774 | 886 | - | - | |
| Armi1g00652 | 1145 | Pfam | PAS fold | 631 | 744 | IPR013767 | GO:0006355(InterPro) | |
| Armi1g00652 | 1145 | Pfam | PAS fold | 761 | 883 | IPR013767 | GO:0006355(InterPro) | |
| Armi1g00652 | 1145 | CDD | PAS | 639 | 745 | IPR000014 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Armi1g00652 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Armi | Armi-Chr1:15345965 | Armi1g02122 | Armi-Chr1:76903825 | dispersed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Armi1g00652 | . | 3 | 1110 | Histidine Kinase gene family | AT5G35840 | 60.657 | 0.0 | 1459.0 | |
| Armi1g02122 | . | 1 | 1120 | Histidine Kinase gene family | AT1G09570 | 74.107 | 0.0 | 1788.0 | |
| Armi3g00624 | ACH | 106 | 1055 | Histidine Kinase gene family | AT2G01830 | 67.25 | 0.0 | 1295.0 | |
| Armi3g01266 | . | 52 | 102 | Histidine Kinase gene family | AT2G18790 | 64.706 | 3.17e-15 | 68.6 | |
| Armi3g03898 | ACH | 106 | 1056 | Histidine Kinase gene family | AT2G01830 | 68.692 | 0.0 | 1325.0 | |
| Armi4g02478 | ACH | 13 | 1197 | Histidine Kinase gene family | AT2G17820 | 64.432 | 0.0 | 1549.0 | |
| Armi5g00803 | ACH | 1 | 921 | Histidine Kinase gene family | AT5G10720 | 59.139 | 0.0 | 1080.0 | |
| Armi6g01173 | . | 46 | 1155 | Histidine Kinase gene family | AT2G18790 | 75.448 | 0.0 | 1776.0 | |
| Armi7g01152 | . | 1025 | 1121 | Histidine Kinase gene family | AT2G47430 | 45.455 | 2.47e-23 | 90.9 | |
| Armi8g01948 | . | 1049 | 1121 | Histidine Kinase gene family | AT2G47430 | 48.0 | 1.19e-16 | 70.5 | |
| Armi9g00059 | . | 39 | 1152 | Histidine Kinase gene family | AT2G18790 | 76.861 | 0.0 | 1820.0 | |
| Armi10g00733 | . | 5 | 649 | Histidine Kinase gene family | AT5G10720 | 57.887 | 0.0 | 709.0 | |
| Armi10g00734 | ACH | 5 | 921 | Histidine Kinase gene family | AT5G10720 | 59.703 | 0.0 | 1073.0 | |
| Armi13g00882 | . | 3 | 1121 | Histidine Kinase gene family | AT2G47430 | 35.979 | 0.0 | 617.0 | |
| Armi15g00951 | . | 5 | 1096 | Histidine Kinase gene family | AT4G18130 | 60.74 | 0.0 | 1396.0 | |
| Armi16g01839 | . | 8 | 1121 | Histidine Kinase gene family | AT2G47430 | 36.063 | 0.0 | 622.0 | |
| Armi18g00701 | . | 106 | 235 | Histidine Kinase gene family | AT2G01830 | 68.462 | 3.47e-55 | 184.0 | |
| Armi18g00741 | ACH | 27 | 1197 | Histidine Kinase gene family | AT2G17820 | 61.551 | 0.0 | 1442.0 |