AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00657 ATGGCTACACAAATCAATCCCTGTTCTTCATCTTCCACCACCTTCCCACCTTCTTCACTCAATCATGAAACCTTTTTTTCTGCAAAATTCTTCAATTTCTCAACAAAATCATCTCCCTCCAGGTGGGTTTTCAAGATTCACTCCAGAATCAATCCTAAAAACCAATTTGAACTCAAATCCTCAAATGGGTATCCTCTTAATGCGATTTCCTTGCAGGATGGTGCAGCCGAGAAGCCTCTAGCAAAGGAGCTTGTGTTACCCGAACAAGCGGAATCCAATCTTAGCGTGACCGTTGTGGGTGCTTCAGGCGATCTCGCCAAGAAAAAGATCTTTCCGGCGCTTTTTGCTCTCTTTTACGAAGATTGTTTACCTCAGAATTTTACTATATTTGGTTATGCACGGACCAAAATGACCGATGAGGAGTTGAGGGAGATGATTAGTAGAACGTTAACTTGCAGAATCGATAAGAGAGAGAACTGTGGTGACAAAATGGAAAAGTTTCTTGAAAGATGCTTTTACCATTCGGGTCAATATAACTCTGAGGAACATTTTGCGGAATTGGACAGTAAGATGAAACAGAAAGAGGGTGGAAAAGTATCGAATAGGTTGTTTTATTTGTCGATACCTCCAGACATTTTTGTGGATGTGGTACGATGTGCCAATGGCAAAGCTTCTTCCAAGAACGGGTGGACAAGGGTAATTGTGGAAAAACCATTTGGTCGCGATGGAGAATCGTCTGGAGAGCTAACAAGAAGCCTGAAGCGGTACTTAGCTGAGGATCAAATCTTTAGGATTGATCATTACTTGGGGAAGGAGCTCGTGGAGAATTTATCGGTTCTTCGTTTCTCAAATCTTGTTTTCGAACCACTTTGGTCAAGAAACTACATTCGCAATGTACAATTCATATTTTCTGAAGATTTTGGTACAGAAGGGCGAGGAGGATACTTTGACAACTATGGAATCATCCGTGATATAATGCAAAACCACCTCCTGCAAATATTAGCGTTGTTCGCAATGGAAACACCCGTGTCTTTGGATGCCGAGGACATCAGAAATGAAAAGGTTAAAGTTTTGAGATCAATGAGACGCCTACGGCTTGAAGATGTAGTGATTGGCCAATACAAGGGGAATAGCAAGGACGGAAAGACGCATTTAGGGTACACAGAGGACCCGACTGTGCCAAACGATAGCCTCACTCCAACTTTTGCAGCGGCCGCGCTCTTTATTGATAATGCCCGGTGGGATGGCGTTCCGTTTCTTATGAAAGCCGGCAAGGCCCTCAATACTAGACGGGCAGAGATCAGAGTTCAATTCAGACACGTTCCAGGTAATCTATACAAGCGAAACTTTGGGACGGATTTGGGTAAGGCTACGAACGAGCTCGTGCTTCGTGTGCAGCCTGACGAAGCCATTTATCTCAAGATCAATAACAAGATTCCTGGTCTCGGAATGAGGCTCGATCGCAGCGACCTTAATTTGCTCTATAGTGCGAGGTATTCGAAAGAAATCCCGGATGCATACGAGCGGCTTCTGTTGGATGCGATAGAAGGAGAAAGAAGATTGTTCATAAGAAGTGATGAGCTTGATGCTGCTTGGTCTATATTCACACCATTGTTGAAAGAACTTGAAGCCAAGAAGATTGCACCGGAGTTGTATCCGTATGGCAGCAGAGGACCCGTAGGAGCTCATTATCTGGCGGCAAACTACAATGTCCGGTGGGGAGATCTCACCGGTGACGACTGA 1743 44.35 MATQINPCSSSSTTFPPSSLNHETFFSAKFFNFSTKSSPSRWVFKIHSRINPKNQFELKSSNGYPLNAISLQDGAAEKPLAKELVLPEQAESNLSVTVVGASGDLAKKKIFPALFALFYEDCLPQNFTIFGYARTKMTDEELREMISRTLTCRIDKRENCGDKMEKFLERCFYHSGQYNSEEHFAELDSKMKQKEGGKVSNRLFYLSIPPDIFVDVVRCANGKASSKNGWTRVIVEKPFGRDGESSGELTRSLKRYLAEDQIFRIDHYLGKELVENLSVLRFSNLVFEPLWSRNYIRNVQFIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRRLRLEDVVIGQYKGNSKDGKTHLGYTEDPTVPNDSLTPTFAAAALFIDNARWDGVPFLMKAGKALNTRRAEIRVQFRHVPGNLYKRNFGTDLGKATNELVLRVQPDEAIYLKINNKIPGLGMRLDRSDLNLLYSARYSKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSIFTPLLKELEAKKIAPELYPYGSRGPVGAHYLAANYNVRWGDLTGDD 580
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00657 580 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 90 572 IPR001282 GO:0004345(PANTHER)|GO:0006006(PANTHER)|GO:0006006(InterPro)|GO:0009051(PANTHER)|GO:0009570(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro)
Armi1g00657 580 FunFam Glucose-6-phosphate 1-dehydrogenase 265 574 - -
Armi1g00657 580 PRINTS Glucose-6-phosphate dehydrogenase signature 308 325 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Armi1g00657 580 PRINTS Glucose-6-phosphate dehydrogenase signature 413 439 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Armi1g00657 580 PRINTS Glucose-6-phosphate dehydrogenase signature 326 342 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Armi1g00657 580 PRINTS Glucose-6-phosphate dehydrogenase signature 232 245 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Armi1g00657 580 PRINTS Glucose-6-phosphate dehydrogenase signature 256 284 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Armi1g00657 580 FunFam Glucose-6-phosphate 1-dehydrogenase 90 264 - -
Armi1g00657 580 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 279 573 IPR022675 GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro)
Armi1g00657 580 PIRSF G6PD 80 577 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Armi1g00657 580 Coils Coil 347 367 - -
Armi1g00657 580 Gene3D - 90 264 - -
Armi1g00657 580 ProSitePatterns Glucose-6-phosphate dehydrogenase active site. 266 272 IPR019796 GO:0004345(InterPro)|GO:0006006(InterPro)
Armi1g00657 580 Gene3D Dihydrodipicolinate Reductase; domain 2 265 574 - -
Armi1g00657 580 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 98 276 IPR022674 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Armi1g00657 580 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 90 279 IPR036291 -
Armi1g00657 580 NCBIfam glucose-6-phosphate dehydrogenase 94 573 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Armi1g00657 580 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 266 573 - -
Armi1g00657 580 Hamap Glucose-6-phosphate 1-dehydrogenase [zwf]. 93 575 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00657 K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:15386381 Armi3g00040 Armi-Chr3:855562 dispersed
Armi Armi-Chr1:15386381 Armi18g00070 Armi-Chr18:1371897 transposed