AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00663 ATGGATTCATCTTCCCAAATCCAACCCACAAACAAAAAGCTAAAACTCTCACTTAACAACGAAGACGATGAAGATCATCACACGATTCATGAAGAATATTTCGGATTGAAGGATTTACCCAATGATGTAATCCTAAATATACTCATCAAGCTCCCGATTTCATCCCTGATTCAGTTCCGGTTAGTTTGCAAGCCATGGAAACTTCTGTCGATCCACCCTGACCTTCACCGGCTCCACCAATCTGCGGCGGCGAACGACGACCCGACGTTGCTGTTCCACTCCGATTACCCGATCCGTAACCACCTCTCGTTTGTCGAATTATCATCCGATTGTGATCGTGACGATGATTGCAAGATTGTAAGAAAGATTTACACTCCGTTTTCCGGGTCCATGCCGGAATTCAACGTCGTCGGGTCATGTAACGGGTTGTTATGCTTATCGGATTCTCTTTACGGGGAACCCGTTTTCTTATTCAACCCGTTTTCCATGGATTATCTGGAGCTACCCAAATCTAAACAGTTTCAGGAACAGGAGGTTCTTTTCGGGTTCGGGTTTCATCCGGATTCAAACGAGTATAAGGTTGTCAAGATTGTGTATTACAGAACCTGGCAGGGACGACGTCGTATCATCCGAAAGAACCGGAATTACCCGAAATCCGAGGTTCAAATTCTCACCATTTCGAAGCAAATTGATGATAAGAGTTGTTCATGGAGGTGCCTTGGGAAAGTGCCTTACTTGCTTGACAAACAAGCAACAGAAGGTCCTGTAGTAAACGGGAGGATCCATTGGGTGAGTCGACCCGGCCGGATCACCGGTGTTCCGGGTCGAGCGATCGTTTCGTTTGATTTAAAAGACGAGTTGTTCAAAGTGGTGGCGAAGCCGAGTCATGCGGTCGTTAACCGTGGCAACAACTATCATTTGGCCGCTATCAAAGGGTGTTTAGCGGTGGTGATTTCGTGTGGGTATGGGAAGTTGGAGATTTGGGTGATGAAGGAATACGATCGTAAGGAATCTTGGGTGAAGGAGTTCGTCATCCATGGAGCGTTTCCGGCAAAAGTGGTGAGCCACGAGCATCGAGATTATGGGATTTGGAGGTGGCGTTCGGGTGGGAGGATGGTTCGGGTTCTTTGTGTTTTGAAGAATGGTGAGATCTTGATGGAATACAGAGGAGGGAGTTTGGTTAAATATGATCCTAAATGGAAAGAGTTTAAAGACGTCGTCTTTAATCGAATGCCGAAGTTGTTTCGGACGATTGTTCACGTTGGTACCCTCAATTGGGTTCGATAA 1287 46.31 MDSSSQIQPTNKKLKLSLNNEDDEDHHTIHEEYFGLKDLPNDVILNILIKLPISSLIQFRLVCKPWKLLSIHPDLHRLHQSAAANDDPTLLFHSDYPIRNHLSFVELSSDCDRDDDCKIVRKIYTPFSGSMPEFNVVGSCNGLLCLSDSLYGEPVFLFNPFSMDYLELPKSKQFQEQEVLFGFGFHPDSNEYKVVKIVYYRTWQGRRRIIRKNRNYPKSEVQILTISKQIDDKSCSWRCLGKVPYLLDKQATEGPVVNGRIHWVSRPGRITGVPGRAIVSFDLKDELFKVVAKPSHAVVNRGNNYHLAAIKGCLAVVISCGYGKLEIWVMKEYDRKESWVKEFVIHGAFPAKVVSHEHRDYGIWRWRSGGRMVRVLCVLKNGEILMEYRGGSLVKYDPKWKEFKDVVFNRMPKLFRTIVHVGTLNWVR 428
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00663 428 Gene3D - 31 78 - -
Armi1g00663 428 Pfam F-box associated domain 257 345 IPR013187 -
Armi1g00663 428 Pfam F-box domain 37 76 IPR001810 GO:0005515(InterPro)
Armi1g00663 428 SUPERFAMILY F-box domain 32 90 IPR036047 GO:0005515(InterPro)
Armi1g00663 428 NCBIfam F-box protein interaction domain 138 378 IPR017451 -
Armi1g00663 428 ProSiteProfiles F-box domain profile. 33 82 IPR001810 GO:0005515(InterPro)
Armi1g00663 428 PANTHER OS02G0783600 PROTEIN 39 345 IPR052361 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00663 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
20278 Armi1g00663 Armi7g00362
20279 Armi1g00663 Armi8g02313
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:15582012 Armi8g02311 Armi-Chr8:89654420 dispersed
Armi Armi-Chr1:56165425 Armi1g00663 Armi-Chr1:15582012 transposed
Armi Armi-Chr1:15582012 Armi7g00362 Armi-Chr7:6665988 wgd
Armi Armi-Chr1:15582012 Armi8g02308 Armi-Chr8:89623970 wgd