Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Armi1g00668	ATGGACTTTTCAGAATCTACAAAAGTTGTATATGATAGGATCCAAAAGATAGAACCCGAAAACGTCTCCAAGATTATTGGGTATCTTCTTTTGCAAGATCATGGTGAAAGAGAGATGATAAGACTAGCCTTTGGCCCTGATAAGTTAATACACTCTTTGATCAGTAACGCCAAGACCCATCTCAAATTACCGTTCAATACATCTTCGTGTCGACCACTTTCCCCTCCTCAGGTCAATTCCATCCCCGAAATGCCCATACACTTCACACCGTTCTCTCCTTCAGCTCGCCGTTCCCCATCAACTCTCCAAATCCCAACTCGCTGTTTTGATCCCCACGGTCAACCTGTGGACTATGTTCCTATGGTTTATCCGGCTTCGTTTCCTGAAGACTATCGTCTTCACAACCAACTTCGTTTCTTGTCCTTGGAAGACCAGATTGAGCCGGTGAACAGCACAGAGTTTTCGACTAACAATGAGTTTTCGACTAACAATTACTACTCGTCGGAACCTGCATTGGGTCCTAGAGCTAATAGGAGGTCACCGAGTTTGCCTGAATTCCCTTTCAAAGTTTGCCATTACTTCCTTAAAGGATTTTGTAGGCATGGAAACAACTGCAGGTACTTGCATCCAACTGCTGAAAGCTTCTCTCAGATCTTTAGCCCTGAGGACGATCATGTCTTTTCACCTGGGTCTCTCGAGAAACTAGAGTTAGAGCTCACCGAGCTCTTGAAATCAAGACGAGGGTTCCCTGTCTCGATTGCTTCTTTACCAATGCTATATTATGAGAAGTTCGGTAAGACACTTCAGGCTGAGGGATATCTCACCGAGAGCCAGAGGCACGGCAAAGCTGGTTATAGTTTGACCAAGCTTCTTGCACGGCTTAAGAGCATTTGTCTCATTGATAGGCCTCATGGGCAACACGCAGTCGTTTTGGCTGATGACTTGGCAAAATGCACGGATCATAACGGAGATAGAAATGAACATGGTGGTATTGTGGCAGGTTCTAGACAGATATATTTGACATTTCCAGCTGAGAGTACCTTCTCAGAGCGCGATGTTTTCAACTATTTTAACAAATTCGGGCCTGTCCATGACGTGAGAATTCCTTGTCAGCAAAAGAGAATGTTCGGATTTGTGACTTTTGTCTTCGAGGATACAGTTAGGCATATTTTAAACAAGGGAAACCCTCATTTCGTGAGCGGTGCACGTGTTTTGATCAAACCTTACCGGGAAAAATCTAAGGCTGATGATAGGAAACATGGAGAGATGTTTCAGAATCCTATGTACCAAGGTGCTCACTGTCTTGATACCGAACTCGGGCTGCAGTCAATGCCCAGAATTTGTGATAATTCAAGATTACTCGGTAAGCAGCTGATTCATGAACAACAAGAGCAAGCACTCGAATTCGAGAGAAGGCGTTTCTCAGAAATGCAGTTAGCAGCAGATCCCAATAACCACCAATTGCCATGTTTTGGAACCTCACTCGAAGAGTTGAAGCTTTCGGAAGGCAATTCTCATGCACAACAGATGGATTTTCCATCGGCAGAGCGCTTTAATTATCTTCTGGATGTTCTGAACAATAGGGAGGAAACAATTAGGCAGATCAATACCAAATACAATGAGCAGGAGAGTAGTCAGGGACTGAATCTTCCAGACAGCCCGTTTGCGTCTGCGTTAGGGGGTGAAATATCGACAGTTATATAG	1704	44.31	MDFSESTKVVYDRIQKIEPENVSKIIGYLLLQDHGEREMIRLAFGPDKLIHSLISNAKTHLKLPFNTSSCRPLSPPQVNSIPEMPIHFTPFSPSARRSPSTLQIPTRCFDPHGQPVDYVPMVYPASFPEDYRLHNQLRFLSLEDQIEPVNSTEFSTNNEFSTNNYYSSEPALGPRANRRSPSLPEFPFKVCHYFLKGFCRHGNNCRYLHPTAESFSQIFSPEDDHVFSPGSLEKLELELTELLKSRRGFPVSIASLPMLYYEKFGKTLQAEGYLTESQRHGKAGYSLTKLLARLKSICLIDRPHGQHAVVLADDLAKCTDHNGDRNEHGGIVAGSRQIYLTFPAESTFSERDVFNYFNKFGPVHDVRIPCQQKRMFGFVTFVFEDTVRHILNKGNPHFVSGARVLIKPYREKSKADDRKHGEMFQNPMYQGAHCLDTELGLQSMPRICDNSRLLGKQLIHEQQEQALEFERRRFSEMQLAADPNNHQLPCFGTSLEELKLSEGNSHAQQMDFPSAERFNYLLDVLNNREETIRQINTKYNEQESSQGLNLPDSPFASALGGEISTVI	567

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Armi1g00668	567	SMART	rrm1-1	337	407	IPR000504	GO:0003723(InterPro)
	Armi1g00668	567	Pfam	RNA recognition motif	348	396	IPR000504	GO:0003723(InterPro)
	Armi1g00668	567	ProSiteProfiles	Zinc finger C3H1-type profile.	185	212	IPR000571	GO:0046872(InterPro)
	Armi1g00668	567	Gene3D	-	186	266	-	-
	Armi1g00668	567	FunFam	zinc finger CCCH domain-containing protein 53-like isoform X2	343	414	-	-
	Armi1g00668	567	SMART	c3hfinal6	187	211	IPR000571	GO:0046872(InterPro)
	Armi1g00668	567	Gene3D	-	342	417	IPR012677	-
	Armi1g00668	567	ProSiteProfiles	OST-type HTH domain profile.	231	314	IPR025605	-
	Armi1g00668	567	PANTHER	RNA-BINDING (RRM-RBD-RNP MOTIFS)	1	558	-	-
	Armi1g00668	567	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	189	210	IPR000571	GO:0046872(InterPro)
	Armi1g00668	567	SUPERFAMILY	RNA-binding domain, RBD	348	423	IPR035979	GO:0003676(InterPro)
	Armi1g00668	567	SUPERFAMILY	CCCH zinc finger	188	210	IPR036855	GO:0046872(InterPro)
	Armi1g00668	567	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	336	411	IPR000504	GO:0003723(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Armi1g00668	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	20282	Armi1g00668	Armi8g02292

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Armi	Armi-Chr14:73449701	Armi1g00668	Armi-Chr1:15712201	dispersed
	Armi	Armi-Chr1:15712201	Armi6g00929	Armi-Chr6:17909851	dispersed
	Armi	Armi-Chr1:15712201	Armi8g02292	Armi-Chr8:89282917	wgd