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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00674 ATGTCGCTGAAACCCACTCTCAATCGCACTGATCGCGATCTCATCGCCCACCCTCTTCGTCCTTCCGGTGAAATTCATGTCATCGTGGGGCCAATGTTTGCTGGTAAAACTACAGCTCTTCTTCGCAGGATCAAATCTGAAGGAACTAATGGCAGGAAGGTAGCAATGATAAAGTCAAGCAAAGATAACCGATATGCTATTGATTCAGTTGTGACCCATGATGGGACGAAGTACCCTTGTTGGGCTCTGCCTGATTTGTTATCTTTCAAACAAAAACTTGGAGAAGAAGCTTATGAAAAGCTGGATGTTATTGGCATAGATGAGGCCCAATTCTTTGATGATCTCTATGACTTTTGTTGTAAAGCTGCTGACCATGATGGAAAAACTGTTATAGTTGCTGGCCTTGATGGTGATTACTTAAGAAGAAACTTTGGTCCAGTTCTTGATCTAGTACCCCTTGCTGATACCATAACCAAATTAACCGCTCGATGCGAACTATGTGGCAAACGAGCCCATTTCACCTTAAGGAAGACCAATGAGACAAAAACCGAACTTATAGGTGGTGCGGACGTGTATATGCCTGTTTGCCGTCAGCATTATGTTAACGGACAAATAGTGATCAAAGCTGCTAGAAATGTGATAGAGGAATCTCATAAGTTTCAGAGTGAACCAGAACCAATCTCAACAATTGTAACTTAA 699 42.35 MSLKPTLNRTDRDLIAHPLRPSGEIHVIVGPMFAGKTTALLRRIKSEGTNGRKVAMIKSSKDNRYAIDSVVTHDGTKYPCWALPDLLSFKQKLGEEAYEKLDVIGIDEAQFFDDLYDFCCKAADHDGKTVIVAGLDGDYLRRNFGPVLDLVPLADTITKLTARCELCGKRAHFTLRKTNETKTELIGGADVYMPVCRQHYVNGQIVIKAARNVIEESHKFQSEPEPISTIVT 232
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00674 232 Gene3D - 17 160 IPR027417 -
Armi1g00674 232 Pfam Thymidine kinase 23 200 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Armi1g00674 232 ProSitePatterns Thymidine kinase cellular-type signature. 187 200 IPR020633 GO:0004797(InterPro)|GO:0005524(InterPro)
Armi1g00674 232 Gene3D - 161 202 - -
Armi1g00674 232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 161 IPR027417 -
Armi1g00674 232 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 161 203 - -
Armi1g00674 232 FunFam Thymidine kinase 19 160 - -
Armi1g00674 232 PANTHER THYMIDINE KINASE 17 222 IPR001267 GO:0004797(PANTHER)|GO:0004797(InterPro)|GO:0005524(InterPro)|GO:0046104(PANTHER)
Armi1g00674 232 FunFam Thymidine kinase 161 203 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00674 K00857 thymidine kinase [EC:2.7.1.21]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:15850553 Armi9g02621 Armi-Chr9:90449580 dispersed