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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00679 ATGACCATGGTTTTAAGCTCTGCATCCATGGTTATATTCATCTCCATCATTCTTGTTTCTTTTTTCTTCACTTCATCTGCTCAAACCTGTTCAAACCACACTTTTACATCCAAAAGGGTTTTCACTTCTTGCCAAGATCTTCCACAGCTCAATGCCCATCTCCACTGGACCTATTTCAAATCCTCCAACCAAGCCAAGATCGCGTTTCGAGCCCAACACACCCCCAACGGATGGACCGCGTGGGCAATCAATCCGAACCGACGAGCCATGGTTGGATCGCAAGCCCTGTTGGCTTTTCGCGACAGTAAAGGCAGGATGTCGGCATATACAACATTGATCACCGGATACAATCCGTCAATGCAGCCGAGGAAGCTTCAGTTCCGTGTTTCGAAGCTCTCGGCGGAGTATGCGAACAACGAGATCACCATTTTTGCGGTCGTGGGTCCACTGGCGAACGGGCCTGTGGTGAATCAAGTGTGGCAAGTTGGGAGCTTGGATCAGAATGGTGTCCCGCAAATGCATGCAATGGAGCTGGAAAATCTTCAATCCACAGGGGTCCTTGATTTTTCATCAAGTCTGTAA 582 48.63 MTMVLSSASMVIFISIILVSFFFTSSAQTCSNHTFTSKRVFTSCQDLPQLNAHLHWTYFKSSNQAKIAFRAQHTPNGWTAWAINPNRRAMVGSQALLAFRDSKGRMSAYTTLITGYNPSMQPRKLQFRVSKLSAEYANNEITIFAVVGPLANGPVVNQVWQVGSLDQNGVPQMHAMELENLQSTGVLDFSSSL 193
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00679 193 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 11 192 - -
Armi1g00679 193 Pfam Protein of unknown function (DUF568) 90 189 IPR045265 -
Armi1g00679 193 ProSiteProfiles DOMON domain profile. 50 163 IPR005018 -
Armi1g00679 193 CDD DOMON-CIL1-like 41 191 IPR045265 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00679 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr17:56669190 Armi1g00679 Armi-Chr1:15917396 dispersed
Armi Armi-Chr1:15917396 Armi9g02613 Armi-Chr9:90340312 dispersed
Armi Armi-Chr1:15916106 Armi1g00679 Armi-Chr1:15917396 tandem