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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00688 ATGTCGTTGGCCATTGAAGCTGTTTCTAGTTCCACTAACATGGGGTTTGAGGAAAATAAGGAAGGAGACAAGAATGGATTTGAAGAAAATGGAGATGAAAAAGAAAGTATGAAGAGAGTTGGGAGTGAATCATCTTTTGATGAAACTGAAGATGATGAAGAAGAAGATGTAGAGGATAAACAAATTGAATTGGGTCCTCAGTGTACCCTCAAAGAACAATTTGAGAAGGATAAGGATGATGAGAGCCTGAGAAAGTGGAAAGAACAACTTCTTGGAAATGTTGATATCAATGATGTTGGAGAATCACTGGAACCAGAAGTGAAGATCCTCGTTCTTTCGATCCTGTCTCCAGGGAGATCTGAGATCGTTCTTCCTATACCTGAAGATGGAAAACCTAAAGGCCCATGGTTTACGTTAAAAGAAGGTTGTCGTTACAGCCTCAGATTCTCCTTTCAAGTCAGCCATAACATCGTTGCAGGTTTAAAGTACACCAATAACGTGTGGAAAACCGGTGTCAAGGTGGATAGCACGAAACATATGCTTGGTACTTTTAGTCCTCAGCAAGAAGCATACACTTATGACATGCCTGAAGAGACCACCCCTTCTGGTTATTTTGCAAGAGGATCTTACTCTGCTAAAACAAAGTTTGTTGATGATGACAACAAATGTTACTTGGAGATCAACTATACGTTTGACATCCGGAAAGATTGGGCAAGCGTTTAA 723 40.25 MSLAIEAVSSSTNMGFEENKEGDKNGFEENGDEKESMKRVGSESSFDETEDDEEEDVEDKQIELGPQCTLKEQFEKDKDDESLRKWKEQLLGNVDINDVGESLEPEVKILVLSILSPGRSEIVLPIPEDGKPKGPWFTLKEGCRYSLRFSFQVSHNIVAGLKYTNNVWKTGVKVDSTKHMLGTFSPQQEAYTYDMPEETTPSGYFARGSYSAKTKFVDDDNKCYLEINYTFDIRKDWASV 240
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00688 240 SUPERFAMILY E set domains 48 237 IPR014756 -
Armi1g00688 240 MobiDBLite consensus disorder prediction 1 66 - -
Armi1g00688 240 MobiDBLite consensus disorder prediction 17 45 - -
Armi1g00688 240 Pfam RHO protein GDP dissociation inhibitor 48 236 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Armi1g00688 240 PRINTS RHO protein GDP dissociation inhibitor signature 190 202 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Armi1g00688 240 PRINTS RHO protein GDP dissociation inhibitor signature 216 233 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Armi1g00688 240 PRINTS RHO protein GDP dissociation inhibitor signature 157 173 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Armi1g00688 240 PRINTS RHO protein GDP dissociation inhibitor signature 174 189 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Armi1g00688 240 MobiDBLite consensus disorder prediction 46 60 - -
Armi1g00688 240 MobiDBLite consensus disorder prediction 1 16 - -
Armi1g00688 240 Gene3D Coagulation Factor XIII, subunit A, domain 1 59 239 IPR024792 -
Armi1g00688 240 FunFam Rho GDP-dissociation inhibitor 1 60 239 - -
Armi1g00688 240 PANTHER RHO GDP-DISSOCIATION INHIBITOR 40 237 IPR000406 GO:0005094(PANTHER)|GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(PANTHER)|GO:0007266(InterPro)|GO:0016020(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00688 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
20288 Armi1g00688 Armi8g02235
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr14:77076167 Armi1g00688 Armi-Chr1:16139187 dispersed
Armi Armi-Chr1:16139187 Armi8g02752 Armi-Chr8:97792833 dispersed
Armi Armi-Chr4:128681182 Armi1g00688 Armi-Chr1:16139187 transposed
Armi Armi-Chr1:16139187 Armi8g02277 Armi-Chr8:88981234 wgd