AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Armi1g00723 | ATGGGTATTACTGGAGAACTAGTCAGGAGTGTCTTCTCCAAGAATCGATCTTTCGGAACCACCCACGACACCAATGTGATGAGAAGCAATGCAGTTGAAAGAAAGAGATGGGCTTCTGTCAGATCATATCTTTGTGGTGATGAATTCAATTCGGTTTTAGCCGAAGAAGATTCGGCATCTCGAAGAAGCTCGAAAGCAGCCATGAATTCGGTTTTAATCGAGGATTATTCCGGTTCTGCTAGAAGTTCGAAAGCTACGGTTTTTAGTTCAGGGATTGAGGATGAGGGTTCTGAGGCCACTGTCACACAACCGATTTCGGTTAACTCGAATGAAACTCCGGAAGCCGATGAAAAGACCGAATTGGCCTCCAAACATGATGCTGCAGTGATCATTCAGTCAGCATTTAGAAGTTTTCTGATCAGGTGTCGAAACAAGGGAATTGAATCGATGAATAGCGGTGATCTAGAGCTTGTTCCCTCAAGTAAGGAGTCTATAGCTACATCAGTAGAAGTCCAAACTGGAAACTCGGTGGTCGAAGCCAAAGAGGGTACCGATGGTTTCGCCAATCGTACGCAACATCACAAGGGCGCCAGATCACACGTGTCGAAGCTAAAGGAAGATTGGGATGATAGTACTGTGAGTAGCAACATATCGAAAATGAGGATTAAGAATCGACTGGAGGCGTCTACTAGACGCGAAAGGGCACTCGCCTACGCTTTCTCACAACAGCTGAGGATCTGCTCAAAGAAGAAACAGAGTGTGAGATCCGGGAACGATTCGGAAGCGAACATGAGTTGGAGTTGGCTCGAGAGATGGATGGCCACCCGACAACATGATACCTCTTTCGGGGATATAAGCAAACAATTCGAACAACTAAATGGGAATCAAAAACTATTGGTGAAATCGCGAGTATTATCAGATCTAGCCGGGGAAGAGAAGGAAAGCTGCGGATCAAATGAAGTCTCGATGCATTTCGATACCGTTTCTTTGAGCTCAAAAACAGCCGAGAAATCGTACTATAAACCTGCTCGGAACCGGCTCAAGGCTACAAGCGTCTCGAGGCGAAAGAGCAAGGAGTACTCTAAGATGAAGAGGCAAGGAGGAGGAGGAGAAATTAGATGTGAAGGTTAA | 1131 | 45.8 | MGITGELVRSVFSKNRSFGTTHDTNVMRSNAVERKRWASVRSYLCGDEFNSVLAEEDSASRRSSKAAMNSVLIEDYSGSARSSKATVFSSGIEDEGSEATVTQPISVNSNETPEADEKTELASKHDAAVIIQSAFRSFLIRCRNKGIESMNSGDLELVPSSKESIATSVEVQTGNSVVEAKEGTDGFANRTQHHKGARSHVSKLKEDWDDSTVSSNISKMRIKNRLEASTRRERALAYAFSQQLRICSKKKQSVRSGNDSEANMSWSWLERWMATRQHDTSFGDISKQFEQLNGNQKLLVKSRVLSDLAGEEKESCGSNEVSMHFDTVSLSSKTAEKSYYKPARNRLKATSVSRRKSKEYSKMKRQGGGGEIRCEG | 376 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Armi1g00723 | 376 | Pfam | IQ calmodulin-binding motif | 125 | 143 | IPR000048 | GO:0005515(InterPro) | |
| Armi1g00723 | 376 | MobiDBLite | consensus disorder prediction | 352 | 376 | - | - | |
| Armi1g00723 | 376 | PANTHER | IQ-DOMAIN 5-RELATED | 195 | 337 | - | - | |
| Armi1g00723 | 376 | MobiDBLite | consensus disorder prediction | 331 | 376 | - | - | |
| Armi1g00723 | 376 | ProSiteProfiles | IQ motif profile. | 124 | 153 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Armi1g00723 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Armi | Armi-Chr1:17386138 | Armi7g00258 | Armi-Chr7:4422603 | dispersed | |
| Armi | Armi-Chr1:17386138 | Armi4g03902 | Armi-Chr4:134312705 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Armi1g00391 | ACH | 37 | 240 | IQD Protein family | AT3G15050 | 54.673 | 3.77e-74 | 225.0 | |
| Armi1g00723 | . | 1 | 397 | IQD Protein family | AT5G35670 | 43.914 | 2.05e-78 | 246.0 | |
| Armi1g03364 | . | 1 | 374 | IQD Protein family | AT4G14750 | 51.759 | 2.87e-97 | 293.0 | |
| Armi1g04580 | ACH | 1 | 353 | IQD Protein family | AT3G16490 | 47.709 | 2.09e-61 | 200.0 | |
| Armi2g00116 | . | 1 | 414 | IQD Protein family | AT1G72670 | 41.814 | 1.46e-84 | 262.0 | |
| Armi2g00200 | ACH | 1 | 353 | IQD Protein family | AT3G16490 | 52.228 | 4.06e-102 | 306.0 | |
| Armi2g00917 | . | 85 | 579 | IQD Protein family | AT1G74690 | 37.149 | 9.63e-77 | 250.0 | |
| Armi2g02683 | . | 72 | 280 | IQD Protein family | AT5G03040 | 48.357 | 5.65e-57 | 194.0 | |
| Armi3g00821 | . | 1 | 443 | IQD Protein family | AT5G13460 | 44.42 | 2.54e-98 | 298.0 | |
| Armi3g01593 | . | 1 | 252 | IQD Protein family | AT3G15050 | 47.727 | 8.10e-67 | 207.0 | |
| Armi3g02616 | . | 108 | 360 | IQD Protein family | AT5G07240 | 40.418 | 2.40e-40 | 145.0 | |
| Armi3g03225 | ACH | 107 | 451 | IQD Protein family | AT5G03040 | 44.444 | 3.06e-80 | 256.0 | |
| Armi3g03706 | . | 1 | 794 | IQD Protein family | AT1G19870 | 37.597 | 2.03e-125 | 394.0 | |
| Armi3g04723 | . | 541 | 669 | IQD Protein family | AT2G43680 | 47.015 | 5.60e-24 | 93.6 | |
| Armi4g00535 | . | 137 | 793 | IQD Protein family | AT1G19870 | 34.207 | 1.37e-83 | 280.0 | |
| Armi4g03002 | ACH | 1 | 567 | IQD Protein family | AT1G74690 | 40.171 | 1.75e-86 | 277.0 | |
| Armi4g03511 | ACH | 1 | 458 | IQD Protein family | AT5G03040 | 54.661 | 2.47e-151 | 437.0 | |
| Armi4g03902 | ACH | 1 | 448 | IQD Protein family | AT5G03040 | 46.269 | 2.04e-115 | 344.0 | |
| Armi4g04505 | . | 108 | 332 | IQD Protein family | AT5G07240 | 45.749 | 6.30e-44 | 154.0 | |
| Armi4g04644 | . | 11 | 196 | IQD Protein family | AT4G00820 | 41.0 | 3.99e-30 | 119.0 | |
| Armi5g00408 | ACH | 11 | 534 | IQD Protein family | AT4G00820 | 46.084 | 1.48e-127 | 381.0 | |
| Armi6g00013 | . | 1 | 517 | IQD Protein family | AT3G59690 | 40.525 | 4.46e-102 | 310.0 | |
| Armi6g00756 | . | 7 | 450 | IQD Protein family | AT5G03040 | 50.658 | 1.01e-123 | 365.0 | |
| Armi6g01474 | . | 1 | 481 | IQD Protein family | AT4G23060 | 41.176 | 4.23e-69 | 225.0 | |
| Armi6g01892 | . | 1 | 413 | IQD Protein family | AT2G26180 | 59.276 | 1.86e-147 | 425.0 | |
| Armi7g00098 | ACH | 1 | 353 | IQD Protein family | AT3G16490 | 51.75 | 2.87e-94 | 286.0 | |
| Armi7g00258 | ACH | 65 | 255 | IQD Protein family | AT3G15050 | 49.215 | 3.40e-61 | 190.0 | |
| Armi7g02224 | ACH | 1 | 332 | IQD Protein family | AT3G16490 | 45.217 | 3.93e-46 | 159.0 | |
| Armi8g00356 | . | 1 | 378 | IQD Protein family | AT4G14750 | 45.522 | 2.38e-83 | 257.0 | |
| Armi8g02542 | ACH | 48 | 241 | IQD Protein family | AT3G15050 | 50.769 | 3.95e-59 | 187.0 | |
| Armi9g00400 | ACH | 1 | 450 | IQD Protein family | AT5G03040 | 51.724 | 4.67e-138 | 402.0 | |
| Armi9g01025 | . | 1 | 517 | IQD Protein family | AT3G59690 | 50.0 | 5.36e-150 | 437.0 | |
| Armi9g01732 | . | 1 | 469 | IQD Protein family | AT3G49260 | 45.582 | 7.30e-102 | 310.0 | |
| Armi10g00192 | . | 1 | 480 | IQD Protein family | AT4G23060 | 39.2 | 1.47e-59 | 200.0 | |
| Armi10g00379 | ACH | 1 | 420 | IQD Protein family | AT4G10640 | 32.883 | 8.31e-42 | 149.0 | |
| Armi10g01513 | . | 1 | 392 | IQD Protein family | AT3G22190 | 55.769 | 3.27e-117 | 347.0 | |
| Armi13g00196 | ACH | 1 | 575 | IQD Protein family | AT1G74690 | 40.375 | 3.33e-92 | 291.0 | |
| Armi13g01235 | . | 5 | 100 | IQD Protein family | AT3G51380 | 52.381 | 3.32e-28 | 98.2 | |
| Armi13g01522 | . | 1 | 289 | IQD Protein family | AT4G14750 | 34.641 | 3.66e-35 | 130.0 | |
| Armi15g00007 | ACH | 11 | 534 | IQD Protein family | AT4G00820 | 51.63 | 7.35e-139 | 409.0 | |
| Armi16g01779 | . | 99 | 288 | IQD Protein family | AT4G14750 | 34.158 | 1.71e-18 | 83.6 | |
| Armi18g00175 | ACH | 1 | 575 | IQD Protein family | AT1G74690 | 38.699 | 6.78e-85 | 273.0 |