AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Armi1g00733 | ATGGGGTTTTTAATTGTTTTTGCTTTGATCTTCATGCAAATCTACACAATCGGAGCCAAGATCCCGGCGGTGATTGTGTTCGGTGACTCCTCTGTAGATGCCGGCAACAACAACCAAATCCAAACGGTTTTGAAAAGCAATTTCAAGCCCTACGGTCGTGATTTTTTCGGTGGAAAAGCTACCGGAAGATTCTCGAATGGACGTGTTCCGCCTGATTTTATATCGGAATCGTTCGGTTTGCGGCCGTATGTGCCGGCTTACTTGGATACGGCGTATAATATGTCGGATTTTGCTACCGGAGTTTGTTTTGCGTCTGCTGGTACAGGTTACGACAATGCTACATCAGCTGTTCTTTCGGTGATACCTCTATGGAAGGAGTTGGAATACTACAAGGACTACCAAAAGAAACTAAGAGGCCATTTGGGTGATGAAAAGGCCAATACCATTCTATCTGAAGCAGTTTACCTTATAAGCATGGGCACAAATGATTTCCTTGAGAACTACTACACACTTCCCAACAGAAAATCTCAATTCAGCGTTAATCAGTATCAAGATTATCTTGCTGCCATTGCCGAGGGCTTCATCAAGAAGCTCTACGGCCTTAGCGCACGCAAGATTTCCCTCGGAGGTCTTCCTCCGATGGGTTGTTTGCCACTGGAGCGAACAACCAGTTTCATCAATGGGAAAGGAGATACATGCAACGATGAATATAACAAGGTGGCGTTGGCCTTTAATGGGAAGTTGTACGGTATGGTGAAGAGGTTGAATGCCGAGCTTTCGGGGAGCACAATCTTGTTCTCTAATCCATATGCCATTTTCCAGCAAATTGTCCGAAAACCTTCCATTTTCGGATTTGAGACGGCAGCAATAGCATGTTGTTCAACAGGACTATTCGAGATGGGATATATGTGTGATCAATATAATCCGTTCACCTGCTCCGATGCCAATAGATATGTTTTCTGGGATTCTTTCCATCCTTCAGAGAAAACCAACCGTATCATATCTGAGCACTTGTTTAAAACCACTCTTTCTAAATTTTTATCCTAA | 1047 | 43.65 | MGFLIVFALIFMQIYTIGAKIPAVIVFGDSSVDAGNNNQIQTVLKSNFKPYGRDFFGGKATGRFSNGRVPPDFISESFGLRPYVPAYLDTAYNMSDFATGVCFASAGTGYDNATSAVLSVIPLWKELEYYKDYQKKLRGHLGDEKANTILSEAVYLISMGTNDFLENYYTLPNRKSQFSVNQYQDYLAAIAEGFIKKLYGLSARKISLGGLPPMGCLPLERTTSFINGKGDTCNDEYNKVALAFNGKLYGMVKRLNAELSGSTILFSNPYAIFQQIVRKPSIFGFETAAIACCSTGLFEMGYMCDQYNPFTCSDANRYVFWDSFHPSEKTNRIISEHLFKTTLSKFLS | 348 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Armi1g00733 | 348 | Pfam | GDSL-like Lipase-Acylhydrolase | 24 | 338 | IPR001087 | GO:0016788(InterPro) | |
| Armi1g00733 | 348 | CDD | SGNH-plant-lipase-like | 22 | 339 | IPR035669 | - | |
| Armi1g00733 | 348 | FunFam | GDSL esterase-lipase APG | 15 | 343 | - | - | |
| Armi1g00733 | 348 | Gene3D | SGNH hydrolase | 15 | 344 | IPR036514 | - | |
| Armi1g00733 | 348 | SUPERFAMILY | SGNH hydrolase | 140 | 342 | - | - | |
| Armi1g00733 | 348 | PANTHER | GDSL ESTERASE-LIPASE EXL3 | 13 | 337 | IPR050592 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Armi1g00733 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Armi | Armi-Chr1:17643185 | Armi8g02740 | Armi-Chr8:97618322 | dispersed | |
| Armi | Armi-Chr1:17643185 | Armi9g02221 | Armi-Chr9:71623322 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Armi1g00733 | . | 9 | 336 | Pollen Coat Proteome gene family | AT1G75910 | 36.176 | 8.60e-67 | 212.0 | |
| Armi2g00174 | . | 18 | 335 | Pollen Coat Proteome gene family | AT1G75910 | 35.758 | 1.12e-62 | 202.0 | |
| Armi2g03675 | . | 24 | 343 | Pollen Coat Proteome gene family | AT1G75910 | 39.571 | 4.21e-71 | 223.0 | |
| Armi3g00448 | . | 5 | 332 | Pollen Coat Proteome gene family | AT1G75910 | 25.833 | 5.71e-24 | 99.8 | |
| Armi3g01567 | ACH | 24 | 334 | Pollen Coat Proteome gene family | AT1G75930 | 30.084 | 8.99e-28 | 110.0 | |
| Armi3g01600 | . | 28 | 334 | Pollen Coat Proteome gene family | AT1G75910 | 37.5 | 8.56e-64 | 205.0 | |
| Armi3g03420 | . | 29 | 334 | Pollen Coat Proteome gene family | AT1G75910 | 25.075 | 1.02e-18 | 84.3 | |
| Armi3g04130 | . | 9 | 334 | Pollen Coat Proteome gene family | AT1G75910 | 30.994 | 1.10e-40 | 145.0 | |
| Armi4g00286 | . | 172 | 342 | Pollen Coat Proteome gene family | AT1G75930 | 34.254 | 3.66e-28 | 105.0 | |
| Armi4g00287 | . | 23 | 342 | Pollen Coat Proteome gene family | AT1G75910 | 36.17 | 3.20e-68 | 216.0 | |
| Armi4g00292 | . | 28 | 290 | Pollen Coat Proteome gene family | AT1G75910 | 38.023 | 2.09e-56 | 183.0 | |
| Armi4g00294 | . | 23 | 299 | Pollen Coat Proteome gene family | AT1G75910 | 39.35 | 1.21e-63 | 204.0 | |
| Armi4g00296 | . | 23 | 338 | Pollen Coat Proteome gene family | AT1G75910 | 37.538 | 7.07e-70 | 220.0 | |
| Armi4g00297 | . | 23 | 335 | Pollen Coat Proteome gene family | AT1G75910 | 36.646 | 3.65e-67 | 213.0 | |
| Armi4g00299 | . | 23 | 335 | Pollen Coat Proteome gene family | AT1G75910 | 37.267 | 1.03e-67 | 215.0 | |
| Armi6g00960 | . | 6 | 330 | Pollen Coat Proteome gene family | AT1G75930 | 24.638 | 2.40e-23 | 97.4 | |
| Armi8g02740 | . | 22 | 336 | Pollen Coat Proteome gene family | AT1G75910 | 35.671 | 5.62e-64 | 205.0 | |
| Armi9g02217 | . | 5 | 340 | Pollen Coat Proteome gene family | AT1G75910 | 36.088 | 1.30e-64 | 207.0 | |
| Armi9g02220 | . | 5 | 343 | Pollen Coat Proteome gene family | AT1G75910 | 33.898 | 4.21e-62 | 200.0 | |
| Armi9g02221 | . | 13 | 342 | Pollen Coat Proteome gene family | AT1G75930 | 33.824 | 1.62e-54 | 181.0 | |
| Armi13g01773 | . | 28 | 263 | Pollen Coat Proteome gene family | AT4G20670 | 25.82 | 5.41e-16 | 74.3 | |
| Armi15g01185 | . | 6 | 342 | Pollen Coat Proteome gene family | AT1G75930 | 36.212 | 2.14e-59 | 193.0 | |
| Armi15g01312 | . | 26 | 342 | Pollen Coat Proteome gene family | AT1G75930 | 35.061 | 1.72e-59 | 194.0 | |
| Armi15g01314 | . | 7 | 342 | Pollen Coat Proteome gene family | AT1G75910 | 39.031 | 1.83e-70 | 222.0 | |
| Armi17g01246 | . | 18 | 338 | Pollen Coat Proteome gene family | AT1G75910 | 34.848 | 9.99e-63 | 202.0 |