AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00761 ATGGAAGACACACCTGCAACCAATCTCGTCGCCGGTGGCGATTCTCACCCGGACATGATCACAGCATTCTCAGAGATAACTTCAGCTTCCAAAGAAGAAGCCATCTTCTTCCTCGAATCACATAATTTCGATCTCGATTCTGCAGTCTCCACCTTCTTTGAAACCACCGCTGCCGCCGTCGACGAAGACGCTCCCGTGTCTGCTCCACCTCGCCGAAACCCTAACCCTTCTGATACTCATTCTCCTTCCTTTTCACCGTCGTCTTCGCCGTCCCGTTCCCGATCAGCATCCCCACCGCCTTCTCTCGGATTACAACAACTCGCCGGTGTTAATCCGTACAATCTACGATCTAGGAATACCGCTACGGATAAGAAGCCGTCCGGTAGTCGGTCCACTGGACGGATACGGACTTTGTCAGATCTGAATCGATCGGGTGATGGTTCGGGAAGCGATTCAGATGAACCTCAGGAGTATTATGCCGGTGGTGAAAAGAGTGGAATGCTCGTCCAGGATCCATCAAAGGTGAATGATGTGGAATCATTGTTTAACCAAGCTAGACGAGCAGGAGCCGAAGAAGGAACTCTTGATCAACTCCAACCATCTTCGAGCTCCAGAAGCTTTGCTGGAAGAGGAAGGCTACTATCTGGAGAGACAACATCAGCTCCTCCTCAGCAGTCTGAACCTGATGTTCACACGCATACCATCACTTTCTGGACCAATGGTTTCACTGTAGATGATGGTCCTTTGAGGAGGCTGGATGACCCTCAAAATGCATCTTTCTTGGAGAGCATAAGGAAGTCCGAGTGTCCAGAAGAACTTAGGCCTGCAAAAGAAAGAGCTCCGGTCCATGTTAGTCTTGTGAGGAAGTTGGAGGACTACCCTGTCCAGAAACAACGGCACACTGCCTTTGTGGGTGTGGGTAGAACTCTAGGCGCCACCACGTCTTCTAAGGACACGGCTTCCACCACCCCAGTCCCGGCCTCGACCGCTGCTCCAGCCCCATCCTTAGGCCTGGTTGTGGACGACACATTGCCTTCCACCTCTATTCAACTTCGATTGGTTGATGGGACCCGTATGGTTTCACGCTTCAATTTCCATCACACGATCAGTGATATCCGGTCTTTCATTGATGCATCAAGGCCTGGAGGGCCACGGGCTTATCAGCTACTGACGATGGGATTTCCTCCAAAGCAGCTCAACGATTTGAAGCAGACGATCGAAGAGGCCGGGCTAGCCAATTCGGTGGTGATCCAGAAACTCTAA 1263 51.46 MEDTPATNLVAGGDSHPDMITAFSEITSASKEEAIFFLESHNFDLDSAVSTFFETTAAAVDEDAPVSAPPRRNPNPSDTHSPSFSPSSSPSRSRSASPPPSLGLQQLAGVNPYNLRSRNTATDKKPSGSRSTGRIRTLSDLNRSGDGSGSDSDEPQEYYAGGEKSGMLVQDPSKVNDVESLFNQARRAGAEEGTLDQLQPSSSSRSFAGRGRLLSGETTSAPPQQSEPDVHTHTITFWTNGFTVDDGPLRRLDDPQNASFLESIRKSECPEELRPAKERAPVHVSLVRKLEDYPVQKQRHTAFVGVGRTLGATTSSKDTASTTPVPASTAAPAPSLGLVVDDTLPSTSIQLRLVDGTRMVSRFNFHHTISDIRSFIDASRPGGPRAYQLLTMGFPPKQLNDLKQTIEEAGLANSVVIQKL 420
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00761 420 MobiDBLite consensus disorder prediction 312 333 - -
Armi1g00761 420 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 224 315 IPR036241 -
Armi1g00761 420 CDD UBX-UBXN2 348 419 - -
Armi1g00761 420 SUPERFAMILY Ubiquitin-like 303 418 IPR029071 -
Armi1g00761 420 MobiDBLite consensus disorder prediction 195 209 - -
Armi1g00761 420 Pfam UBX domain 345 419 IPR001012 GO:0005515(InterPro)
Armi1g00761 420 MobiDBLite consensus disorder prediction 77 151 - -
Armi1g00761 420 MobiDBLite consensus disorder prediction 189 229 - -
Armi1g00761 420 FunFam Plant UBX domain-containing protein 4 295 420 - -
Armi1g00761 420 Pfam UBA-like domain 19 56 - -
Armi1g00761 420 SMART faf-3 226 322 IPR012989 -
Armi1g00761 420 SUPERFAMILY UBA-like 15 55 IPR009060 GO:0005515(InterPro)
Armi1g00761 420 ProSiteProfiles SEP domain profile. 230 294 IPR012989 -
Armi1g00761 420 FunFam Plant UBX domain-containing protein 4 230 292 - -
Armi1g00761 420 Gene3D - 295 420 - -
Armi1g00761 420 MobiDBLite consensus disorder prediction 60 160 - -
Armi1g00761 420 Pfam SEP domain 235 308 IPR012989 -
Armi1g00761 420 Gene3D - 13 55 - -
Armi1g00761 420 PANTHER UBX DOMAIN CONTAINING PROTEIN 18 419 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
Armi1g00761 420 SMART ubx-3 341 420 IPR001012 GO:0005515(InterPro)
Armi1g00761 420 ProSiteProfiles UBX domain profile. 342 419 IPR001012 GO:0005515(InterPro)
Armi1g00761 420 MobiDBLite consensus disorder prediction 312 329 - -
Armi1g00761 420 Gene3D SEP domain 230 292 IPR036241 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00761 K14012 UBX domain-containing protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:18692379 Armi9g02581 Armi-Chr9:89653324 dispersed
Armi Armi-Chr1:18692379 Armi15g01601 Armi-Chr15:75962596 wgd