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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00773 ATGGATCGGATGACATCTTCTGTAGAATTCATCGAATTCAACTCAATGGCGTCTTCTTCATCTTCGTGGTGGAAGTCGCTCTTCACTCCGGTCAAGAACTCATTCACCGCTCTCTGCTTCAAACGCCTCCAAGAATACGCCATTAAAGCCAAAGTCAAGGTGATGAGATTACCAGAAGAGAAGAATTCGTTAGCAAGCCTTGAGGAGATGGAGAAGATTATAGGGTATAAGTTCAAGAAAAAGATGCTATTGCTACAAGCTTTTACGCATCCAAGTTATCATGGCTCCGAATCCTATGAAAGACTTGAGTATGTTGGTGACTCCATTCTCAATTTTCTTATCAGTAAACAACAATTCTTCATGTATCCAGATCTCTCACCAGGGTCGTTGACTGCTCTCCGAGCTGCAAATGTTGATACCGAGAAGCTAGCACGTGTTGCGGTTAAATATAACTTCCATAAGTACATTCGCCATGAAAATCCGACGCTTAGTAAGCAAATTCGAGTATTTACGAGAGCTCTTGAAAAGTATCCTCTACATTCATATGGATTAATCGATGCTCCAAAGACTTTAGCTGATATCGTTGAATCCACAATAGGAGCCATCTATATTGACAGCAATTCCTCAATCGATATTACGTGGGAGGTGGCTAAGATTCTACTCGAGCCCATGATCACTCCCGAAATGATCCAAAAGAACCCGGTGAGGAAGCTCAACGAACTCTGCCACAAAAAGAAACTGAAGATACGATTTAGAGATAAATGGTTAAAAGAAGGCGTGTACGAAGTTTTTATTGATAATAAACTTAGAGGTAGAGGTGAATACCAAGCCAAGAAGGAAATCGCGTTGAACAGAGCAGCCGAGGATGCATGTAACAACATCATCAACGGCCGGGATGAACATTAG 906 41.72 MDRMTSSVEFIEFNSMASSSSSWWKSLFTPVKNSFTALCFKRLQEYAIKAKVKVMRLPEEKNSLASLEEMEKIIGYKFKKKMLLLQAFTHPSYHGSESYERLEYVGDSILNFLISKQQFFMYPDLSPGSLTALRAANVDTEKLARVAVKYNFHKYIRHENPTLSKQIRVFTRALEKYPLHSYGLIDAPKTLADIVESTIGAIYIDSNSSIDITWEVAKILLEPMITPEMIQKNPVRKLNELCHKKKLKIRFRDKWLKEGVYEVFIDNKLRGRGEYQAKKEIALNRAAEDACNNIINGRDEH 301
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00773 301 Gene3D - 230 301 - -
Armi1g00773 301 PANTHER DICER-RELATED 50 295 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Armi1g00773 301 Pfam Ribonuclease III domain 100 206 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Armi1g00773 301 Pfam Double-stranded RNA binding motif 234 293 IPR014720 -
Armi1g00773 301 CDD RIBOc 83 228 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Armi1g00773 301 ProSitePatterns Ribonuclease III family signature. 100 108 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Armi1g00773 301 FunFam Endoribonuclease dicer-like 1 61 228 - -
Armi1g00773 301 Gene3D Ribonuclease III domain 57 229 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Armi1g00773 301 SUPERFAMILY RNase III domain-like 66 227 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Armi1g00773 301 SMART riboneu5 82 230 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Armi1g00773 301 ProSiteProfiles Ribonuclease III family domain profile. 67 207 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Armi1g00773 301 SUPERFAMILY dsRNA-binding domain-like 189 294 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00773 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr1:19265048 Armi7g00312 Armi-Chr7:5533626 dispersed
Armi Armi-Chr1:19265048 Armi1g00774 Armi-Chr1:19305148 tandem