AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Armi1g00779 ATGGACGAGGTGATCACAATGGCCGATGCGGCGTACCGCGCTACCAAGGCTACGGGGACGACGGCGGAGACGCCTTCATCTTCAGCTCAGCTTCTCCCCTACAGTGTTCCGCTGTTATCAGCATTCCTTGCATTTGCCATTGCTCAATTCCTCAAGGTCATCACCACCTGGTATAAGGAAAAGAGATGGGATCCGAAAAAGATTATTGGCTCGGGTGGAATGCCATCGTCTCATTCTTCAACTGTTGTAGCACTGGCAGTATCCATAGGTCTACATGAAGGGGTCGAAGCATCAACTTTCGCAATTGCTGTTGTCTTGGCTTTTATTGTTATGTATGATGCATCTGGAGTCAGACTCCATGCGGGACGCCAAGCTGAGTTGTTGAACCAGATTGTCTGTGAATTTCCTCCGGAGCACCCTTTATCCACATCCAGACCTCTACGTGATTCTCTTGGGCATACTCCGTTACAGGTGGTTGCAGGGGCCATGTTGGGATGCATAGTTGCATTCGTGATTAAAGTATCCGACTAG 531 49.53 MDEVITMADAAYRATKATGTTAETPSSSAQLLPYSVPLLSAFLAFAIAQFLKVITTWYKEKRWDPKKIIGSGGMPSSHSSTVVALAVSIGLHEGVEASTFAIAVVLAFIVMYDASGVRLHAGRQAELLNQIVCEFPPEHPLSTSRPLRDSLGHTPLQVVAGAMLGCIVAFVIKVSD 176
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Armi1g00779 176 CDD PAP2-like 38 172 - -
Armi1g00779 176 PANTHER ACID PHOSPHATASE-VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 5 173 IPR003832 -
Armi1g00779 176 Pfam Divergent PAP2 family 37 168 IPR003832 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Armi1g00779 K09775 uncharacterized protein
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Armi Armi-Chr14:76745150 Armi1g00779 Armi-Chr1:19370817 dispersed
Armi Armi-Chr1:19370817 Armi3g00085 Armi-Chr3:1739451 dispersed
Armi Armi-Chr1:19370817 Armi5g01009 Armi-Chr5:22759786 transposed